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* Remove unused variableseschnett2012-11-22
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@265 4825ed28-b72c-4eae-9704-e50c059e567d
* add missing header fileknarf2009-12-07
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@248 4825ed28-b72c-4eae-9704-e50c059e567d
* fixed function argument types used in calls to H5Sselect_hyperslab()tradke2008-01-23
| | | | | | | (they had changed after HDF5 1.6.3) git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@235 4825ed28-b72c-4eae-9704-e50c059e567d
* added missing header <string.h>tradke2008-01-23
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@234 4825ed28-b72c-4eae-9704-e50c059e567d
* Choose HDF5 1.6 API when compiled with HDF5 1.8.schnetter2008-01-15
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@233 4825ed28-b72c-4eae-9704-e50c059e567d
* moved driver-independent HDF5 utilities from here to CactusExternal/HDF5tradke2007-11-12
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@232 4825ed28-b72c-4eae-9704-e50c059e567d
* added utility program to convert CarpetIOHDF5 output data into PUGH's IOHDF5tradke2007-07-02
| | | | | | | format git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@231 4825ed28-b72c-4eae-9704-e50c059e567d
* give some better help on how to use the hdf5_extract utilitiy programtradke2007-05-31
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@230 4825ed28-b72c-4eae-9704-e50c059e567d
* fixed a bug when recombining/merging compressed datasets.tradke2006-11-27
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@229 4825ed28-b72c-4eae-9704-e50c059e567d
* Reverse the dimensions when converting from HDF5 to SDF.tradke2005-11-01
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@223 4825ed28-b72c-4eae-9704-e50c059e567d
* Get the missing metadata information from command line parameters.tradke2004-09-15
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@207 4825ed28-b72c-4eae-9704-e50c059e567d
* Added utility program to convert SDF datafiles into HDF5 so that they can betradke2004-08-24
| | | | | | | | imported into Cactus (using the filereader). Still a prototype version only, therefore no documentation yet. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@205 4825ed28-b72c-4eae-9704-e50c059e567d
* Reduce the sieve buffer size from 32 MB down to 8 MB to overcome memorytradke2004-08-24
| | | | | | | allocation problems for large number of files to be recombined. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@204 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed typo in routine name.tradke2004-08-24
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@203 4825ed28-b72c-4eae-9704-e50c059e567d
* replacing cctk_vwarn with fprintf'syye002004-08-24
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@202 4825ed28-b72c-4eae-9704-e50c059e567d
* assert fixyye002004-08-12
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@201 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed typo in warning message.tradke2004-06-16
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@198 4825ed28-b72c-4eae-9704-e50c059e567d
* Use default values for the "name", "iteration", and "timelevel"tradke2004-06-09
| | | | | | | attributes if a dataset doesn't have them attached. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@195 4825ed28-b72c-4eae-9704-e50c059e567d
* Add a GLOBAL_ATTRIBUTES_GROUP to mark the output as a Cactus HDF5 file.tradke2004-06-08
| | | | | | | | | Give the HDF5 datasets proper names (following the IOHDF5 naming conventions). This closes PR CactusPUGHIO/1756: "ieee->hdf5 converter problem for 2D files". git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@193 4825ed28-b72c-4eae-9704-e50c059e567d
* Also print the outfile filename in progress report.tradke2004-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@177 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed typo in warning message.tradke2003-09-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@175 4825ed28-b72c-4eae-9704-e50c059e567d
* Added command line option '-single_precision'. If set, double-precisiontradke2003-06-10
| | | | | | | floating point datasets will be recombined and written in single precision. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@169 4825ed28-b72c-4eae-9704-e50c059e567d
* Fix for the recombination of chunks starting at the same origin (but havetradke2003-05-12
| | | | | | | | | different extents). Also open the input file(s) with a sieve buffer size of 32 MB in order to reduce the number of low-level reads when reading in a chunk. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@166 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed a typo in an output message.tradke2003-03-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@163 4825ed28-b72c-4eae-9704-e50c059e567d
* Recombination is done in z-slices now which greatly reduces the number oftradke2003-03-02
| | | | | | | | individual I/O writes. This shortens recombination time by a factor of proc_nx * proc_ny at best. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@162 4825ed28-b72c-4eae-9704-e50c059e567d
* There is doch a 'maximum number of open file descriptors' limitationtradke2003-02-27
| | | | | | | | so I had undo the corresponding changes from my last commit. Tested now with 1024 chunked files on a linux system. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@161 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed code which assumed that input files would need temporarily ↵tradke2003-02-27
| | | | | | closed/reopened. HDF5 doesn't seem to have a limitation in the number of open files. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@160 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed initial pathname of object to be extracted.tradke2002-10-29
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@149 4825ed28-b72c-4eae-9704-e50c059e567d
* Check for memory allocation errors.tradke2002-08-21
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@148 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed wrong CCTK_FILEVERSION string.tradke2002-06-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@144 4825ed28-b72c-4eae-9704-e50c059e567d
* Added missing include file "cctk.h" which define CCTK_FILEVERSION.tradke2002-05-23
| | | | | | | This closes PR CactusPUGHIO/1064. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@136 4825ed28-b72c-4eae-9704-e50c059e567d
* Changed the arrangement name in the CCTK_FILEVERSION strings from AlphaThornstradke2002-05-14
| | | | | | | into CactusPUGHIO. This closes PR CactusPUGHIO/1045. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@134 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed include paths.tradke2002-05-06
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@130 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed a utility which was there only for the platinum runs.tradke2002-04-08
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@114 4825ed28-b72c-4eae-9704-e50c059e567d
* Another fix for the delta attribute.tradke2002-03-05
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@109 4825ed28-b72c-4eae-9704-e50c059e567d
* Check if the output file already exists - and open it in append mode then.tradke2002-03-04
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@107 4825ed28-b72c-4eae-9704-e50c059e567d
* Check if the output file already exists - and open it in append mode then.tradke2002-03-04
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@106 4825ed28-b72c-4eae-9704-e50c059e567d
* Bugfix for sign flipping.tradke2002-02-27
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@104 4825ed28-b72c-4eae-9704-e50c059e567d
* Added a double-to-single precision converter. This is meant to exist onlytradke2002-02-20
| | | | | | | temporarily - so no documentation on that. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@100 4825ed28-b72c-4eae-9704-e50c059e567d
* Utility program to extract individual objects (groups or datasets) from an ↵tradke2002-02-20
| | | | | | HDF5 file. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@98 4825ed28-b72c-4eae-9704-e50c059e567d
* Reflecting data with a given stencil width.tradke2002-02-19
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@96 4825ed28-b72c-4eae-9704-e50c059e567d
* Another fix for the bounding box attributes.tradke2002-02-18
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@95 4825ed28-b72c-4eae-9704-e50c059e567d
* Bugfix for fixing the bounding box attributes (didn't use native datatypes).tradke2002-02-18
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@94 4825ed28-b72c-4eae-9704-e50c059e567d
* Fix for recombining cropped datasets where some processors contributetradke2002-02-18
| | | | | | | with no data chunks at all. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@93 4825ed28-b72c-4eae-9704-e50c059e567d
* Fix bounding box attributes for reflected datasets.tradke2002-02-18
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@92 4825ed28-b72c-4eae-9704-e50c059e567d
* Final version of the bitant-to-fullmode converter. Now it also flips the signtradke2002-01-28
| | | | | | | | | of reflected data if called with '-flipsign'. Also added utility program to merge HDF5 data files into a single one (useful to combine several timesteps or different variables). git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@90 4825ed28-b72c-4eae-9704-e50c059e567d
* Added converter for bitant data into fullmode data.tradke2002-01-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@81 4825ed28-b72c-4eae-9704-e50c059e567d
* Added utility program. See ThornGuide for details.tradke2001-12-28
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@77 4825ed28-b72c-4eae-9704-e50c059e567d
* Bugfix for allocating a string buffer.tradke2001-05-11
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@62 4825ed28-b72c-4eae-9704-e50c059e567d
* Making rcsid strings constant - PR 669.goodale2001-05-10
| | | | | | | Tom git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@58 4825ed28-b72c-4eae-9704-e50c059e567d
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