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* Use CPPFLAGS when compiling the utilitiesHEADmasterhinder2013-01-29
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@266 4825ed28-b72c-4eae-9704-e50c059e567d
* Remove unused variableseschnett2012-11-22
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@265 4825ed28-b72c-4eae-9704-e50c059e567d
* Move MPI support from flesh to a thorneschnett2012-07-21
| | | | | | | | | | Move MPI support from flesh to thorn ExternalLibraries/MPI. This also requires thorns that call MPI directly to declare this in their configuration.ccl. Existing configurations using MPI need to include ExternalLibraries/MPI into their thorn list. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@262 4825ed28-b72c-4eae-9704-e50c059e567d
* Add new bindings include directory to search patheschnett2012-06-24
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@261 4825ed28-b72c-4eae-9704-e50c059e567d
* Define THORN_IS_IOHDF5 when building utilitieseschnett2012-05-01
| | | | | | | | Define THORN_IS_IOHDF5 when building utilities so that CCTK_WARN etc. can be used in debug mode. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@259 4825ed28-b72c-4eae-9704-e50c059e567d
* Correct signatures of scheduled functionseschnett2011-01-21
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@254 4825ed28-b72c-4eae-9704-e50c059e567d
* add missing header fileknarf2009-12-07
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@248 4825ed28-b72c-4eae-9704-e50c059e567d
* IOHDF5: Adapt to the new parsing API in IOUtilschnetter2009-12-05
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@247 4825ed28-b72c-4eae-9704-e50c059e567d
* Correct header file nameschnetter2009-12-05
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@246 4825ed28-b72c-4eae-9704-e50c059e567d
* Include missing header fileschnetter2009-12-05
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@245 4825ed28-b72c-4eae-9704-e50c059e567d
* fix utils by adding $(GENERAL_LIBRARIES) to link lineknarf2009-09-23
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@244 4825ed28-b72c-4eae-9704-e50c059e567d
* include missing header file <string.h>tradke2008-01-24
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@236 4825ed28-b72c-4eae-9704-e50c059e567d
* fixed function argument types used in calls to H5Sselect_hyperslab()tradke2008-01-23
| | | | | | | (they had changed after HDF5 1.6.3) git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@235 4825ed28-b72c-4eae-9704-e50c059e567d
* added missing header <string.h>tradke2008-01-23
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@234 4825ed28-b72c-4eae-9704-e50c059e567d
* Choose HDF5 1.6 API when compiled with HDF5 1.8.schnetter2008-01-15
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@233 4825ed28-b72c-4eae-9704-e50c059e567d
* moved driver-independent HDF5 utilities from here to CactusExternal/HDF5tradke2007-11-12
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@232 4825ed28-b72c-4eae-9704-e50c059e567d
* added utility program to convert CarpetIOHDF5 output data into PUGH's IOHDF5tradke2007-07-02
| | | | | | | format git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@231 4825ed28-b72c-4eae-9704-e50c059e567d
* give some better help on how to use the hdf5_extract utilitiy programtradke2007-05-31
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@230 4825ed28-b72c-4eae-9704-e50c059e567d
* fixed a bug when recombining/merging compressed datasets.tradke2006-11-27
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@229 4825ed28-b72c-4eae-9704-e50c059e567d
* Fix removal of recovery checkpoint: if IO::recover_and_remove is set, thetradke2006-06-06
| | | | | | | | recovery file will be removed only after IO::checkpoint_keep successful checkpoints have been written. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@227 4825ed28-b72c-4eae-9704-e50c059e567d
* Undo my last (accidental) modification to these two files.tradke2005-11-16
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@226 4825ed28-b72c-4eae-9704-e50c059e567d
* Don't remove an initial data checkpoint file if IO::checkpoint_keep is set totradke2005-11-16
| | | | | | | a value larger 0. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@225 4825ed28-b72c-4eae-9704-e50c059e567d
* Reverse the dimensions when converting from HDF5 to SDF.tradke2005-11-01
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@223 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed small memory when using Util_snprintf().tradke2005-07-26
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@219 4825ed28-b72c-4eae-9704-e50c059e567d
* Added necessary logic to implement IO::checkpoint_keep as steerable parameter.tradke2005-06-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@217 4825ed28-b72c-4eae-9704-e50c059e567d
* Add short file descriptions and CVS Header comments.schnetter2005-05-23
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@216 4825ed28-b72c-4eae-9704-e50c059e567d
* Give local makefile variables unique names.tradke2005-02-22
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@215 4825ed28-b72c-4eae-9704-e50c059e567d
* Use makefile defines provided by other thorns' configuration files.tradke2005-02-22
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@213 4825ed28-b72c-4eae-9704-e50c059e567d
* Thorn library names are prefixed by $(CCTK_LIBNAME_PREFIX).tradke2005-02-22
| | | | | | | This closes PR CactusPUGHIO/1896: "Thorn IOHDF5 breaks building thorn utilities". git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@212 4825ed28-b72c-4eae-9704-e50c059e567d
* Use aliased function IO_TruncateOutputFiles() to check whether or nottradke2004-11-17
| | | | | | | | to truncate existing output files. You must also update CactusBase/IOUtil now. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@211 4825ed28-b72c-4eae-9704-e50c059e567d
* Test the makefile variable HDF5_LFS_FLAGS to check for HDF5 LFS support.tradke2004-11-08
| | | | | | | This makefile variable is set by the Cactus HDF5 configure script. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@210 4825ed28-b72c-4eae-9704-e50c059e567d
* Get the missing metadata information from command line parameters.tradke2004-09-15
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@207 4825ed28-b72c-4eae-9704-e50c059e567d
* Removing printing of error message from this file if there is no SDF.goodale2004-08-25
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@206 4825ed28-b72c-4eae-9704-e50c059e567d
* Added utility program to convert SDF datafiles into HDF5 so that they can betradke2004-08-24
| | | | | | | | imported into Cactus (using the filereader). Still a prototype version only, therefore no documentation yet. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@205 4825ed28-b72c-4eae-9704-e50c059e567d
* Reduce the sieve buffer size from 32 MB down to 8 MB to overcome memorytradke2004-08-24
| | | | | | | allocation problems for large number of files to be recombined. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@204 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed typo in routine name.tradke2004-08-24
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@203 4825ed28-b72c-4eae-9704-e50c059e567d
* replacing cctk_vwarn with fprintf'syye002004-08-24
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@202 4825ed28-b72c-4eae-9704-e50c059e567d
* assert fixyye002004-08-12
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@201 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed grdoc for OutputVarAs().tradke2004-07-05
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@200 4825ed28-b72c-4eae-9704-e50c059e567d
* Use the new routine IOUtil_AssembleFilename() to generate filenames fortradke2004-06-30
| | | | | | | | | checkpoint/filereader files. This closes PR CactusPUGHIO 1061: "IOHDF5/DumpGH.c/Checkpoint writes to strings without checking the string lengths". git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@199 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed typo in warning message.tradke2004-06-16
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@198 4825ed28-b72c-4eae-9704-e50c059e567d
* After setup, do an initial I/O parameter parsing and warn/stop on parsing errorstradke2004-06-09
| | | | | | | | (depending on IO::strict_io_parameter_check). You will also need to update CactusBase/IOUtil. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@197 4825ed28-b72c-4eae-9704-e50c059e567d
* Use default values for the "name", "iteration", and "timelevel"tradke2004-06-09
| | | | | | | attributes if a dataset doesn't have them attached. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@195 4825ed28-b72c-4eae-9704-e50c059e567d
* Add a GLOBAL_ATTRIBUTES_GROUP to mark the output as a Cactus HDF5 file.tradke2004-06-08
| | | | | | | | | Give the HDF5 datasets proper names (following the IOHDF5 naming conventions). This closes PR CactusPUGHIO/1756: "ieee->hdf5 converter problem for 2D files". git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@193 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed filenames for chunked output files.tradke2004-05-06
| | | | | | | Don't output chunked files for grid scalars. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@191 4825ed28-b72c-4eae-9704-e50c059e567d
* Bug fix from Yosef Zlochower: initialize "last_checkpoint_iteration" in the ↵tradke2004-04-30
| | | | | | GH structure. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@189 4825ed28-b72c-4eae-9704-e50c059e567d
* Also print the outfile filename in progress report.tradke2004-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@177 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed typo in warning message.tradke2003-09-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@175 4825ed28-b72c-4eae-9704-e50c059e567d
* Added command line option '-single_precision'. If set, double-precisiontradke2003-06-10
| | | | | | | floating point datasets will be recombined and written in single precision. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@169 4825ed28-b72c-4eae-9704-e50c059e567d
* Some compilers (eg. SGI cc) only accept constant values as initializerstradke2003-06-10
| | | | | | | in a structure definition. The structure is now initialized explicitely. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@168 4825ed28-b72c-4eae-9704-e50c059e567d
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