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#! /bin/bash
################################################################################
# Prepare
################################################################################
# Set up shell
set -x # Output commands
set -e # Abort on errors
################################################################################
# Search
################################################################################
if [ -z "${HDF5_DIR}" ]; then
echo "BEGIN MESSAGE"
echo "HDF5 selected, but HDF5_DIR not set. Checking some places..."
echo "END MESSAGE"
FILES="include/hdf5.h lib/libhdf5.a lib/libhdf5_cpp.a $(if [ "${F90}" != "none" ]; then echo 'lib/libhdf5_fortran.a'; fi) lib/libhdf5_hl.a lib/libhdf5_hl_cpp.a"
DIRS="/usr /usr/local /usr/local/hdf5 /usr/local/packages/hdf5 /usr/local/apps/hdf5 /opt/local ${HOME} ${HOME}/hdf5 c:/packages/hdf5"
for dir in $DIRS; do
HDF5_DIR="$dir"
for file in $FILES; do
if [ ! -r "$dir/$file" ]; then
unset HDF5_DIR
break
fi
done
if [ -n "$HDF5_DIR" ]; then
break
fi
done
if [ -z "$HDF5_DIR" ]; then
echo "BEGIN MESSAGE"
echo "HDF5 not found"
echo "END MESSAGE"
else
echo "BEGIN MESSAGE"
echo "Found HDF5 in ${HDF5_DIR}"
echo "END MESSAGE"
fi
fi
################################################################################
# Build
################################################################################
if [ -z "${HDF5_DIR}" -o "${HDF5_DIR}" = 'BUILD' ]; then
echo "BEGIN MESSAGE"
echo "Building HDF5..."
echo "END MESSAGE"
# Set locations
THORN=HDF5
NAME=hdf5-1.8.5-patch1
SRCDIR=$(dirname $0)
BUILD_DIR=${SCRATCH_BUILD}/build/${THORN}
INSTALL_DIR=${SCRATCH_BUILD}/external/${THORN}
DONE_FILE=${SCRATCH_BUILD}/done/${THORN}
HDF5_DIR=${INSTALL_DIR}
(
exec >&2 # Redirect stdout to stderr
set -x # Output commands
set -e # Abort on errors
cd ${SCRATCH_BUILD}
if [ -e ${DONE_FILE} -a ${DONE_FILE} -nt ${SRCDIR}/dist/${NAME}.tar.gz \
-a ${DONE_FILE} -nt ${SRCDIR}/HDF5.sh ]
then
echo "HDF5: The enclosed HDF5 library has already been built; doing nothing"
else
echo "HDF5: Building enclosed HDF5 library"
# Should we use gmake or make?
MAKE=$(gmake --help > /dev/null 2>&1 && echo gmake || echo make)
# Should we use gtar or tar?
TAR=$(gtar --help > /dev/null 2> /dev/null && echo gtar || echo tar)
# Should we use gpatch or patch?
if [ -z "$PATCH" ]; then
PATCH=$(gpatch -v > /dev/null 2>&1 && echo gpatch || echo patch)
fi
# Set up environment
if [ "${F90}" = "none" ]; then
echo 'BEGIN MESSAGE'
echo 'No Fortran 90 compiler available. Building HDF5 library without Fortran support.'
echo 'END MESSAGE'
unset FC
unset FCFLAGS
else
export FC="${F90}"
export FCFLAGS="${F90FLAGS}"
fi
export LDFLAGS
unset LIBS
unset RPATH
if echo '' ${ARFLAGS} | grep 64 > /dev/null 2>&1; then
export OBJECT_MODE=64
fi
echo "HDF5: Preparing directory structure..."
mkdir build external done 2> /dev/null || true
rm -rf ${BUILD_DIR} ${INSTALL_DIR}
mkdir ${BUILD_DIR} ${INSTALL_DIR}
echo "HDF5: Unpacking archive..."
pushd ${BUILD_DIR}
${TAR} xzf ${SRCDIR}/dist/${NAME}.tar.gz
${PATCH} -p0 < ${SRCDIR}/dist/dt_arith.diff
echo "HDF5: Configuring..."
cd ${NAME}
./configure --prefix=${HDF5_DIR} --with-zlib=${ZLIB_DIR} --enable-cxx $(if [ -n "${FC}" ]; then echo '' '--enable-fortran'; fi)
echo "HDF5: Building..."
${MAKE}
echo "HDF5: Installing..."
${MAKE} install
popd
echo "HDF5: Cleaning up..."
rm -rf ${BUILD_DIR}
date > ${DONE_FILE}
echo "HDF5: Done."
fi
)
if (( $? )); then
echo 'BEGIN ERROR'
echo 'Error while building HDF5. Aborting.'
echo 'END ERROR'
exit 1
fi
fi
################################################################################
# Check for additional libraries
################################################################################
# Set options
if [ "${HDF5_DIR}" = '/usr' -o "${HDF5_DIR}" = '/usr/local' ]; then
HDF5_INC_DIRS=''
HDF5_LIB_DIRS=''
else
# Fortran modules may be located in the lib directory
HDF5_INC_DIRS="${HDF5_DIR}/include ${HDF5_DIR}/lib"
HDF5_LIB_DIRS="${HDF5_DIR}/lib"
fi
HDF5_LIBS='hdf5_hl_cpp hdf5_hl hdf5_cpp hdf5_fortran hdf5'
# Check whether we are running on Windows
if perl -we 'exit (`uname` =~ /^CYGWIN/)'; then
is_windows=0
else
is_windows=1
fi
# Check whether we are running on MacOS
if perl -we 'exit (`uname` =~ /^Darwin/)'; then
is_macos=0
else
is_macos=1
fi
# Check whether we have to link with libsz.a
if grep -qe '#define H5_HAVE_LIBSZ 1' ${HDF5_DIR}/include/H5pubconf.h 2> /dev/null; then
test_szlib=0
else
test_szlib=1
fi
if [ $test_szlib -eq 0 ]; then
HDF5_LIB_DIRS="$HDF5_LIB_DIRS $LIBSZ_DIR"
if [ $is_windows -eq 0 ]; then
HDF5_LIBS="$HDF5_LIBS sz"
else
HDF5_LIBS="$HDF5_LIBS szlib"
fi
fi
# Check whether we have to link with libz.a
if grep -qe '#define H5_HAVE_LIBZ 1' ${HDF5_DIR}/include/H5pubconf.h 2> /dev/null; then
test_zlib=0
else
test_zlib=1
fi
if [ $test_zlib -eq 0 ]; then
HDF5_LIB_DIRS="$HDF5_LIB_DIRS $LIBZ_DIR"
if [ $is_windows -eq 0 ]; then
HDF5_LIBS="$HDF5_LIBS z"
else
HDF5_LIBS="$HDF5_LIBS zlib"
fi
fi
# Add the math library which might not be linked by default
if [ $is_windows -eq 0 ]; then
HDF5_LIBS="$HDF5_LIBS m"
fi
################################################################################
# Configure Cactus
################################################################################
# Pass options to Cactus
echo "BEGIN MAKE_DEFINITION"
echo "HAVE_HDF5 = 1"
echo "HDF5_DIR = ${HDF5_DIR}"
echo "HDF5_INC_DIRS = ${HDF5_INC_DIRS}"
echo "HDF5_LIB_DIRS = ${HDF5_LIB_DIRS}"
echo "HDF5_LIBS = ${HDF5_LIBS}"
echo "END MAKE_DEFINITION"
echo 'INCLUDE_DIRECTORY $(HDF5_INC_DIRS)'
echo 'LIBRARY_DIRECTORY $(HDF5_LIB_DIRS)'
echo 'LIBRARY $(HDF5_LIBS)'
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