#! /bin/bash ################################################################################ # Prepare ################################################################################ # Set up shell set -x # Output commands set -e # Abort on errors ################################################################################ # Search ################################################################################ if [ -z "${HDF5_DIR}" ]; then echo "BEGIN MESSAGE" echo "HDF5 selected, but HDF5_DIR not set. Checking some places..." echo "END MESSAGE" FILES="include/hdf5.h lib/libhdf5.a lib/libhdf5_cpp.a $(if [ "${F90}" != "none" ]; then echo 'lib/libhdf5_fortran.a'; fi) lib/libhdf5_hl.a lib/libhdf5_hl_cpp.a" DIRS="/usr /usr/local /usr/local/hdf5 /usr/local/packages/hdf5 /usr/local/apps/hdf5 /opt/local ${HOME} ${HOME}/hdf5 c:/packages/hdf5" for dir in $DIRS; do HDF5_DIR="$dir" for file in $FILES; do if [ ! -r "$dir/$file" ]; then unset HDF5_DIR break fi done if [ -n "$HDF5_DIR" ]; then break fi done if [ -z "$HDF5_DIR" ]; then echo "BEGIN MESSAGE" echo "HDF5 not found" echo "END MESSAGE" else echo "BEGIN MESSAGE" echo "Found HDF5 in ${HDF5_DIR}" echo "END MESSAGE" fi fi ################################################################################ # Build ################################################################################ if [ -z "${HDF5_DIR}" -o "${HDF5_DIR}" = 'BUILD' ]; then echo "BEGIN MESSAGE" echo "Building HDF5..." echo "END MESSAGE" # Set locations THORN=HDF5 NAME=hdf5-1.8.5-patch1 SRCDIR=$(dirname $0) BUILD_DIR=${SCRATCH_BUILD}/build/${THORN} INSTALL_DIR=${SCRATCH_BUILD}/external/${THORN} DONE_FILE=${SCRATCH_BUILD}/done/${THORN} HDF5_DIR=${INSTALL_DIR} ( exec >&2 # Redirect stdout to stderr set -x # Output commands set -e # Abort on errors cd ${SCRATCH_BUILD} if [ -e ${DONE_FILE} -a ${DONE_FILE} -nt ${SRCDIR}/dist/${NAME}.tar.gz \ -a ${DONE_FILE} -nt ${SRCDIR}/HDF5.sh ] then echo "HDF5: The enclosed HDF5 library has already been built; doing nothing" else echo "HDF5: Building enclosed HDF5 library" # Should we use gmake or make? MAKE=$(gmake --help > /dev/null 2>&1 && echo gmake || echo make) # Should we use gtar or tar? TAR=$(gtar --help > /dev/null 2> /dev/null && echo gtar || echo tar) # Should we use gpatch or patch? if [ -z "$PATCH" ]; then PATCH=$(gpatch -v > /dev/null 2>&1 && echo gpatch || echo patch) fi # Set up environment if [ "${F90}" = "none" ]; then echo 'BEGIN MESSAGE' echo 'No Fortran 90 compiler available. Building HDF5 library without Fortran support.' echo 'END MESSAGE' unset FC unset FCFLAGS else export FC="${F90}" export FCFLAGS="${F90FLAGS}" fi export LDFLAGS unset LIBS unset RPATH if echo '' ${ARFLAGS} | grep 64 > /dev/null 2>&1; then export OBJECT_MODE=64 fi echo "HDF5: Preparing directory structure..." mkdir build external done 2> /dev/null || true rm -rf ${BUILD_DIR} ${INSTALL_DIR} mkdir ${BUILD_DIR} ${INSTALL_DIR} echo "HDF5: Unpacking archive..." pushd ${BUILD_DIR} ${TAR} xzf ${SRCDIR}/dist/${NAME}.tar.gz ${PATCH} -p0 < ${SRCDIR}/dist/dt_arith.diff echo "HDF5: Configuring..." cd ${NAME} ./configure --prefix=${HDF5_DIR} --with-zlib=${ZLIB_DIR} --enable-cxx $(if [ -n "${FC}" ]; then echo '' '--enable-fortran'; fi) echo "HDF5: Building..." ${MAKE} echo "HDF5: Installing..." ${MAKE} install popd echo "HDF5: Cleaning up..." rm -rf ${BUILD_DIR} date > ${DONE_FILE} echo "HDF5: Done." fi ) if (( $? )); then echo 'BEGIN ERROR' echo 'Error while building HDF5. Aborting.' echo 'END ERROR' exit 1 fi fi ################################################################################ # Check for additional libraries ################################################################################ # Set options if [ "${HDF5_DIR}" = '/usr' -o "${HDF5_DIR}" = '/usr/local' ]; then HDF5_INC_DIRS='' HDF5_LIB_DIRS='' else # Fortran modules may be located in the lib directory HDF5_INC_DIRS="${HDF5_DIR}/include ${HDF5_DIR}/lib" HDF5_LIB_DIRS="${HDF5_DIR}/lib" fi HDF5_LIBS='hdf5_hl_cpp hdf5_hl hdf5_cpp hdf5_fortran hdf5' # Check whether we are running on Windows if perl -we 'exit (`uname` =~ /^CYGWIN/)'; then is_windows=0 else is_windows=1 fi # Check whether we are running on MacOS if perl -we 'exit (`uname` =~ /^Darwin/)'; then is_macos=0 else is_macos=1 fi # Check whether we have to link with libsz.a if grep -qe '#define H5_HAVE_LIBSZ 1' ${HDF5_DIR}/include/H5pubconf.h 2> /dev/null; then test_szlib=0 else test_szlib=1 fi if [ $test_szlib -eq 0 ]; then HDF5_LIB_DIRS="$HDF5_LIB_DIRS $LIBSZ_DIR" if [ $is_windows -eq 0 ]; then HDF5_LIBS="$HDF5_LIBS sz" else HDF5_LIBS="$HDF5_LIBS szlib" fi fi # Check whether we have to link with libz.a if grep -qe '#define H5_HAVE_LIBZ 1' ${HDF5_DIR}/include/H5pubconf.h 2> /dev/null; then test_zlib=0 else test_zlib=1 fi if [ $test_zlib -eq 0 ]; then HDF5_LIB_DIRS="$HDF5_LIB_DIRS $LIBZ_DIR" if [ $is_windows -eq 0 ]; then HDF5_LIBS="$HDF5_LIBS z" else HDF5_LIBS="$HDF5_LIBS zlib" fi fi # Add the math library which might not be linked by default if [ $is_windows -eq 0 ]; then HDF5_LIBS="$HDF5_LIBS m" fi ################################################################################ # Configure Cactus ################################################################################ # Pass options to Cactus echo "BEGIN MAKE_DEFINITION" echo "HAVE_HDF5 = 1" echo "HDF5_DIR = ${HDF5_DIR}" echo "HDF5_INC_DIRS = ${HDF5_INC_DIRS}" echo "HDF5_LIB_DIRS = ${HDF5_LIB_DIRS}" echo "HDF5_LIBS = ${HDF5_LIBS}" echo "END MAKE_DEFINITION" echo 'INCLUDE_DIRECTORY $(HDF5_INC_DIRS)' echo 'LIBRARY_DIRECTORY $(HDF5_LIB_DIRS)' echo 'LIBRARY $(HDF5_LIBS)'