CarpetIOF5: Make generic reading work

11 files changed, 487 insertions, 0 deletions

diff --git a/CarpetDev/CarpetIOF5/par/iof5-checkpoint.par b/CarpetDev/CarpetIOF5/par/iof5-checkpoint.par
index 3306b73e6..f3bacfa89 100644
--- a/CarpetDev/CarpetIOF5/par/iof5-checkpoint.par
+++ b/CarpetDev/CarpetIOF5/par/iof5-checkpoint.par
@@ -49,3 +49,4 @@ InitBase::initial_data_setup_method = "init_all_levels"
 
 CarpetIOF5::checkpoint = yes
 IO::checkpoint_every   = 1024
+IO::checkpoint_dir     = $parfile
diff --git a/CarpetDev/CarpetIOF5/par/iof5-multipatch-input.par b/CarpetDev/CarpetIOF5/par/iof5-multipatch-input.par
new file mode 100644
index 000000000..202cb179b
--- /dev/null
+++ b/CarpetDev/CarpetIOF5/par/iof5-multipatch-input.par
@@ -0,0 +1,52 @@
+ActiveThorns = "
+        Boundary
+        Carpet
+        CarpetIOF5
+        CarpetLib
+        CarpetRegrid2
+        CartGrid3D
+        CoordBase
+        Coordinates
+        F5
+        Formaline
+        GSL
+        HDF5
+        InitBase
+        IOUtil
+        LoopControl
+        SymBase
+"
+
+
+
+Cactus::cctk_run_title             = "IOF5"
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::cctk_itlast = 0
+
+IO::out_dir = $parfile
+
+Carpet::domain_from_multipatch   = yes
+CartGrid3D::type                 = "multipatch"
+Coordinates::coordinate_system   = "Thornburg04"
+Coordinates::h_cartesian         = 0.25
+Coordinates::h_radial            = 0.25
+Coordinates::sphere_inner_radius = 1.0
+Coordinates::sphere_outer_radius = 3.0
+Coordinates::n_angular           = 8
+
+Carpet::max_refinement_levels = 10
+CarpetRegrid2::num_centres    =  1
+CarpetRegrid2::num_levels_1   =  3
+CarpetRegrid2::radius_1[1]    =  0.5
+CarpetRegrid2::radius_1[2]    =  0.2
+
+InitBase::initial_data_setup_method = "init_all_levels"
+
+IO::filereader_ID_dir   = "iof5-multipatch"
+IO::filereader_ID_files = "iof5-multipatch"
+IO::filereader_ID_vars  = "grid::coordinates"
+
+CarpetIOF5::out_every = 1
+CarpetIOF5::out_vars  = "grid::coordinates"
diff --git a/CarpetDev/CarpetIOF5/par/iof5-refined-cell-input.par b/CarpetDev/CarpetIOF5/par/iof5-refined-cell-input.par
new file mode 100644
index 000000000..322067721
--- /dev/null
+++ b/CarpetDev/CarpetIOF5/par/iof5-refined-cell-input.par
@@ -0,0 +1,62 @@
+ActiveThorns = "
+        Boundary
+        Carpet
+        CarpetIOF5
+        CarpetLib
+        CarpetRegrid2
+        CartGrid3D
+        CoordBase
+        F5
+        Formaline
+        GSL
+        HDF5
+        InitBase
+        IOUtil
+        LoopControl
+        SymBase
+"
+
+
+
+Cactus::cctk_run_title             = "IOF5"
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::cctk_itlast = 1024
+
+IO::out_dir = $parfile
+
+Carpet::domain_from_coordbase         = yes
+CartGrid3D::type                      = "coordbase"
+CoordBase::domainsize                 = "minmax"
+CoordBase::xmin                       = -1.0
+CoordBase::ymin                       = -1.0
+CoordBase::zmin                       = -1.0
+CoordBase::xmax                       = +1.0
+CoordBase::ymax                       = +1.0
+CoordBase::zmax                       = +1.0
+CoordBase::dx                         =  0.25
+CoordBase::dy                         =  0.25
+CoordBase::dz                         =  0.25
+CoordBase::boundary_staggered_x_lower = yes
+CoordBase::boundary_staggered_y_lower = yes
+CoordBase::boundary_staggered_z_lower = yes
+CoordBase::boundary_staggered_x_upper = yes
+CoordBase::boundary_staggered_y_upper = yes
+CoordBase::boundary_staggered_z_upper = yes
+
+Carpet::refinement_centering  = "cell"
+Carpet::max_refinement_levels = 10
+CarpetRegrid2::num_centres    =  1
+CarpetRegrid2::num_levels_1   =  3
+CarpetRegrid2::radius_1[1]    =  0.5
+CarpetRegrid2::radius_1[2]    =  0.2
+
+InitBase::initial_data_setup_method = "init_all_levels"
+
+IO::filereader_ID_dir   = "iof5-refined-cell"
+IO::filereader_ID_files = "iof5-refined-cell"
+IO::filereader_ID_vars  = "grid::coordinates"
+
+CarpetIOF5::out_every = 256
+CarpetIOF5::out_vars  = "grid::coordinates"
diff --git a/CarpetDev/CarpetIOF5/par/iof5-refined-input.par b/CarpetDev/CarpetIOF5/par/iof5-refined-input.par
new file mode 100644
index 000000000..30917f401
--- /dev/null
+++ b/CarpetDev/CarpetIOF5/par/iof5-refined-input.par
@@ -0,0 +1,55 @@
+ActiveThorns = "
+        Boundary
+        Carpet
+        CarpetIOF5
+        CarpetLib
+        CarpetRegrid2
+        CartGrid3D
+        CoordBase
+        F5
+        Formaline
+        GSL
+        HDF5
+        InitBase
+        IOUtil
+        LoopControl
+        SymBase
+"
+
+
+
+Cactus::cctk_run_title             = "IOF5"
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::cctk_itlast = 1024
+
+IO::out_dir = $parfile
+
+Carpet::domain_from_coordbase = yes
+CartGrid3D::type              = "coordbase"
+CoordBase::domainsize         = "minmax"
+CoordBase::xmin               = -1.0
+CoordBase::ymin               = -1.0
+CoordBase::zmin               = -1.0
+CoordBase::xmax               = +1.0
+CoordBase::ymax               = +1.0
+CoordBase::zmax               = +1.0
+CoordBase::dx                 =  0.25
+CoordBase::dy                 =  0.25
+CoordBase::dz                 =  0.25
+
+Carpet::max_refinement_levels = 10
+CarpetRegrid2::num_centres    =  1
+CarpetRegrid2::num_levels_1   =  3
+CarpetRegrid2::radius_1[1]    =  0.5
+CarpetRegrid2::radius_1[2]    =  0.2
+
+InitBase::initial_data_setup_method = "init_all_levels"
+
+IO::filereader_ID_dir   = "iof5-refined"
+IO::filereader_ID_files = "iof5-refined"
+IO::filereader_ID_vars  = "grid::coordinates"
+
+CarpetIOF5::out_every = 256
+CarpetIOF5::out_vars  = "grid::coordinates"
diff --git a/CarpetDev/CarpetIOF5/par/iof5-uniform-fragment-input.par b/CarpetDev/CarpetIOF5/par/iof5-uniform-fragment-input.par
new file mode 100644
index 000000000..3593ea50f
--- /dev/null
+++ b/CarpetDev/CarpetIOF5/par/iof5-uniform-fragment-input.par
@@ -0,0 +1,46 @@
+ActiveThorns = "
+        Boundary
+        Carpet
+        CarpetIOF5
+        CarpetLib
+        CartGrid3D
+        CoordBase
+        F5
+        Formaline
+        GSL
+        HDF5
+        InitBase
+        IOUtil
+        LoopControl
+        SymBase
+"
+
+
+
+Cactus::cctk_run_title             = "IOF5"
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::cctk_itlast = 2
+
+IO::out_dir = $parfile
+
+Carpet::domain_from_coordbase = yes
+CartGrid3D::type              = "coordbase"
+CoordBase::domainsize         = "minmax"
+CoordBase::xmin               = +1.0
+CoordBase::ymin               = +1.0
+CoordBase::zmin               = +1.0
+CoordBase::xmax               = +3.0
+CoordBase::ymax               = +3.0
+CoordBase::zmax               = +3.0
+CoordBase::dx                 =  0.25
+CoordBase::dy                 =  0.25
+CoordBase::dz                 =  0.25
+
+IO::filereader_ID_dir   = "iof5-uniform-fragment"
+IO::filereader_ID_files = "iof5-uniform-fragment"
+IO::filereader_ID_vars  = "grid::coordinates"
+
+CarpetIOF5::out_every = 2
+CarpetIOF5::out_vars  = "grid::coordinates"
diff --git a/CarpetDev/CarpetIOF5/par/iof5-uniform-fragment.par b/CarpetDev/CarpetIOF5/par/iof5-uniform-fragment.par
new file mode 100644
index 000000000..6c363bb52
--- /dev/null
+++ b/CarpetDev/CarpetIOF5/par/iof5-uniform-fragment.par
@@ -0,0 +1,44 @@
+ActiveThorns = "
+        Boundary
+        Carpet
+        CarpetIOF5
+        CarpetLib
+        CartGrid3D
+        CoordBase
+        F5
+        Formaline
+        GSL
+        HDF5
+        InitBase
+        IOUtil
+        LoopControl
+        SymBase
+"
+
+
+
+Cactus::cctk_run_title             = "IOF5"
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::cctk_itlast = 2
+
+IO::out_dir = $parfile
+
+Carpet::domain_from_coordbase = yes
+CartGrid3D::type              = "coordbase"
+CoordBase::domainsize         = "minmax"
+CoordBase::xmin               = -1.0
+CoordBase::ymin               = -1.0
+CoordBase::zmin               = -1.0
+CoordBase::xmax               = +1.0
+CoordBase::ymax               = +1.0
+CoordBase::zmax               = +1.0
+CoordBase::dx                 =  0.25
+CoordBase::dy                 =  0.25
+CoordBase::dz                 =  0.25
+
+CarpetIOF5::fragment_contiguous_components = yes
+
+CarpetIOF5::out_every = 2
+CarpetIOF5::out_vars  = "grid::coordinates"
diff --git a/CarpetDev/CarpetIOF5/par/iof5-uniform-input.par b/CarpetDev/CarpetIOF5/par/iof5-uniform-input.par
new file mode 100644
index 000000000..7dfbefd80
--- /dev/null
+++ b/CarpetDev/CarpetIOF5/par/iof5-uniform-input.par
@@ -0,0 +1,46 @@
+ActiveThorns = "
+        Boundary
+        Carpet
+        CarpetIOF5
+        CarpetLib
+        CartGrid3D
+        CoordBase
+        F5
+        Formaline
+        GSL
+        HDF5
+        InitBase
+        IOUtil
+        LoopControl
+        SymBase
+"
+
+
+
+Cactus::cctk_run_title             = "IOF5"
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::cctk_itlast = 2
+
+IO::out_dir = $parfile
+
+Carpet::domain_from_coordbase = yes
+CartGrid3D::type              = "coordbase"
+CoordBase::domainsize         = "minmax"
+CoordBase::xmin               = +1.0
+CoordBase::ymin               = +1.0
+CoordBase::zmin               = +1.0
+CoordBase::xmax               = +3.0
+CoordBase::ymax               = +3.0
+CoordBase::zmax               = +3.0
+CoordBase::dx                 =  0.25
+CoordBase::dy                 =  0.25
+CoordBase::dz                 =  0.25
+
+IO::filereader_ID_dir   = "iof5-uniform"
+IO::filereader_ID_files = "iof5-uniform"
+IO::filereader_ID_vars  = "grid::coordinates"
+
+CarpetIOF5::out_every = 2
+CarpetIOF5::out_vars  = "grid::coordinates"
diff --git a/CarpetDev/CarpetIOF5/par/iof5-uniform-separate-fragment-input.par b/CarpetDev/CarpetIOF5/par/iof5-uniform-separate-fragment-input.par
new file mode 100644
index 000000000..55f69a326
--- /dev/null
+++ b/CarpetDev/CarpetIOF5/par/iof5-uniform-separate-fragment-input.par
@@ -0,0 +1,46 @@
+ActiveThorns = "
+        Boundary
+        Carpet
+        CarpetIOF5
+        CarpetLib
+        CartGrid3D
+        CoordBase
+        F5
+        Formaline
+        GSL
+        HDF5
+        InitBase
+        IOUtil
+        LoopControl
+        SymBase
+"
+
+
+
+Cactus::cctk_run_title             = "IOF5"
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::cctk_itlast = 2
+
+IO::out_dir = $parfile
+
+Carpet::domain_from_coordbase = yes
+CartGrid3D::type              = "coordbase"
+CoordBase::domainsize         = "minmax"
+CoordBase::xmin               = +1.0
+CoordBase::ymin               = +1.0
+CoordBase::zmin               = +1.0
+CoordBase::xmax               = +3.0
+CoordBase::ymax               = +3.0
+CoordBase::zmax               = +3.0
+CoordBase::dx                 =  0.25
+CoordBase::dy                 =  0.25
+CoordBase::dz                 =  0.25
+
+IO::filereader_ID_dir   = "iof5-uniform-separate-fragment"
+IO::filereader_ID_files = "iof5-uniform-separate-fragment"
+IO::filereader_ID_vars  = "grid::coordinates"
+
+CarpetIOF5::out_every = 2
+CarpetIOF5::out_vars  = "grid::coordinates"
diff --git a/CarpetDev/CarpetIOF5/par/iof5-uniform-separate-fragment.par b/CarpetDev/CarpetIOF5/par/iof5-uniform-separate-fragment.par
new file mode 100644
index 000000000..9f319c9ed
--- /dev/null
+++ b/CarpetDev/CarpetIOF5/par/iof5-uniform-separate-fragment.par
@@ -0,0 +1,45 @@
+ActiveThorns = "
+        Boundary
+        Carpet
+        CarpetIOF5
+        CarpetLib
+        CartGrid3D
+        CoordBase
+        F5
+        Formaline
+        GSL
+        HDF5
+        InitBase
+        IOUtil
+        LoopControl
+        SymBase
+"
+
+
+
+Cactus::cctk_run_title             = "IOF5"
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::cctk_itlast = 2
+
+IO::out_dir = $parfile
+
+Carpet::domain_from_coordbase = yes
+CartGrid3D::type              = "coordbase"
+CoordBase::domainsize         = "minmax"
+CoordBase::xmin               = -1.0
+CoordBase::ymin               = -1.0
+CoordBase::zmin               = -1.0
+CoordBase::xmax               = +1.0
+CoordBase::ymax               = +1.0
+CoordBase::zmax               = +1.0
+CoordBase::dx                 =  0.25
+CoordBase::dy                 =  0.25
+CoordBase::dz                 =  0.25
+
+CarpetIOF5::separate_single_component_tensors = yes
+CarpetIOF5::fragment_contiguous_components    = yes
+
+CarpetIOF5::out_every = 2
+CarpetIOF5::out_vars  = "grid::coordinates"
diff --git a/CarpetDev/CarpetIOF5/par/iof5-uniform-separate-input.par b/CarpetDev/CarpetIOF5/par/iof5-uniform-separate-input.par
new file mode 100644
index 000000000..4cfc8ac32
--- /dev/null
+++ b/CarpetDev/CarpetIOF5/par/iof5-uniform-separate-input.par
@@ -0,0 +1,46 @@
+ActiveThorns = "
+        Boundary
+        Carpet
+        CarpetIOF5
+        CarpetLib
+        CartGrid3D
+        CoordBase
+        F5
+        Formaline
+        GSL
+        HDF5
+        InitBase
+        IOUtil
+        LoopControl
+        SymBase
+"
+
+
+
+Cactus::cctk_run_title             = "IOF5"
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::cctk_itlast = 2
+
+IO::out_dir = $parfile
+
+Carpet::domain_from_coordbase = yes
+CartGrid3D::type              = "coordbase"
+CoordBase::domainsize         = "minmax"
+CoordBase::xmin               = +1.0
+CoordBase::ymin               = +1.0
+CoordBase::zmin               = +1.0
+CoordBase::xmax               = +3.0
+CoordBase::ymax               = +3.0
+CoordBase::zmax               = +3.0
+CoordBase::dx                 =  0.25
+CoordBase::dy                 =  0.25
+CoordBase::dz                 =  0.25
+
+IO::filereader_ID_dir   = "iof5-uniform-separate"
+IO::filereader_ID_files = "iof5-uniform-separate"
+IO::filereader_ID_vars  = "grid::coordinates"
+
+CarpetIOF5::out_every = 2
+CarpetIOF5::out_vars  = "grid::coordinates"
diff --git a/CarpetDev/CarpetIOF5/par/iof5-uniform-separate.par b/CarpetDev/CarpetIOF5/par/iof5-uniform-separate.par
new file mode 100644
index 000000000..78d4bd290
--- /dev/null
+++ b/CarpetDev/CarpetIOF5/par/iof5-uniform-separate.par
@@ -0,0 +1,44 @@
+ActiveThorns = "
+        Boundary
+        Carpet
+        CarpetIOF5
+        CarpetLib
+        CartGrid3D
+        CoordBase
+        F5
+        Formaline
+        GSL
+        HDF5
+        InitBase
+        IOUtil
+        LoopControl
+        SymBase
+"
+
+
+
+Cactus::cctk_run_title             = "IOF5"
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::cctk_itlast = 2
+
+IO::out_dir = $parfile
+
+Carpet::domain_from_coordbase = yes
+CartGrid3D::type              = "coordbase"
+CoordBase::domainsize         = "minmax"
+CoordBase::xmin               = -1.0
+CoordBase::ymin               = -1.0
+CoordBase::zmin               = -1.0
+CoordBase::xmax               = +1.0
+CoordBase::ymax               = +1.0
+CoordBase::zmax               = +1.0
+CoordBase::dx                 =  0.25
+CoordBase::dy                 =  0.25
+CoordBase::dz                 =  0.25
+
+CarpetIOF5::separate_single_component_tensors = yes
+
+CarpetIOF5::out_every = 2
+CarpetIOF5::out_vars  = "grid::coordinates"