PETSC Thorn

git-svn-id: http://svn.cactuscode.org/arrangements/CactusExternal/PETSc/trunk@2 fc86f234-e40e-4302-a95b-5e02f8c343c9

8 files changed, 284 insertions, 0 deletions

diff --git a/README b/README
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+CVS info   : $Header$
+
+Cactus Code Thorn PETSC
+Thorn Author(s)     : Yaakoub Y El-Khamra <yye00@cc.lsu.edu>
+Thorn Maintainer(s) : Yaakoub Y El-Khamra <yye00@cc.lsu.edu>
+--------------------------------------------------------------------------
+
+Purpose of the thorn:
+This thorn implements PETSC by means of a configuration script.
diff --git a/configuration.ccl b/configuration.ccl
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+# Configuration definitions for thorn PETSC
+# $Header$
+
+# NO_SOURCE
+
+PROVIDES PETSC
+{
+  SCRIPT petsc.sh
+  LANG sh
+}
diff --git a/doc/documentation.tex b/doc/documentation.tex
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+% *======================================================================*
+%  Cactus Thorn template for ThornGuide documentation
+%  Author: Ian Kelley
+%  Date: Sun Jun 02, 2002
+%  $Header$
+%
+%  Thorn documentation in the latex file doc/documentation.tex
+%  will be included in ThornGuides built with the Cactus make system.
+%  The scripts employed by the make system automatically include
+%  pages about variables, parameters and scheduling parsed from the
+%  relevant thorn CCL files.
+%
+%  This template contains guidelines which help to assure that your
+%  documentation will be correctly added to ThornGuides. More
+%  information is available in the Cactus UsersGuide.
+%
+%  Guidelines:
+%   - Do not change anything before the line
+%       % START CACTUS THORNGUIDE",
+%     except for filling in the title, author, date, etc. fields.
+%        - Each of these fields should only be on ONE line.
+%        - Author names should be separated with a \\ or a comma.
+%   - You can define your own macros, but they must appear after
+%     the START CACTUS THORNGUIDE line, and must not redefine standard
+%     latex commands.
+%   - To avoid name clashes with other thorns, 'labels', 'citations',
+%     'references', and 'image' names should conform to the following
+%     convention:
+%       ARRANGEMENT_THORN_LABEL
+%     For example, an image wave.eps in the arrangement CactusWave and
+%     thorn WaveToyC should be renamed to CactusWave_WaveToyC_wave.eps
+%   - Graphics should only be included using the graphicx package.
+%     More specifically, with the "\includegraphics" command.  Do
+%     not specify any graphic file extensions in your .tex file. This
+%     will allow us to create a PDF version of the ThornGuide
+%     via pdflatex.
+%   - References should be included with the latex "\bibitem" command.
+%   - Use \begin{abstract}...\end{abstract} instead of \abstract{...}
+%   - Do not use \appendix, instead include any appendices you need as
+%     standard sections.
+%   - For the benefit of our Perl scripts, and for future extensions,
+%     please use simple latex.
+%
+% *======================================================================*
+%
+% Example of including a graphic image:
+%    \begin{figure}[ht]
+% 	\begin{center}
+%    	   \includegraphics[width=6cm]{MyArrangement_MyThorn_MyFigure}
+% 	\end{center}
+% 	\caption{Illustration of this and that}
+% 	\label{MyArrangement_MyThorn_MyLabel}
+%    \end{figure}
+%
+% Example of using a label:
+%   \label{MyArrangement_MyThorn_MyLabel}
+%
+% Example of a citation:
+%    \cite{MyArrangement_MyThorn_Author99}
+%
+% Example of including a reference
+%   \bibitem{MyArrangement_MyThorn_Author99}
+%   {J. Author, {\em The Title of the Book, Journal, or periodical}, 1 (1999),
+%   1--16. {\tt http://www.nowhere.com/}}
+%
+% *======================================================================*
+
+% If you are using CVS use this line to give version information
+% $Header$
+
+\documentclass{article}
+
+% Use the Cactus ThornGuide style file
+% (Automatically used from Cactus distribution, if you have a
+%  thorn without the Cactus Flesh download this from the Cactus
+%  homepage at www.cactuscode.org)
+\usepackage{../../../../doc/latex/cactus}
+
+\begin{document}
+
+% The author of the documentation
+\author{Yaakoub Y El-Khamra \textless yye00@cc.lsu.edu\textgreater}
+
+% The title of the document (not necessarily the name of the Thorn)
+\title{}
+
+% the date your document was last changed, if your document is in CVS,
+% please use:
+%    \date{$ $Date$ $}
+\date{April 12 2004}
+
+\maketitle
+
+% Do not delete next line
+% START CACTUS THORNGUIDE
+
+% Add all definitions used in this documentation here
+%   \def\mydef etc
+
+% Add an abstract for this thorn's documentation
+\begin{abstract}
+
+\end{abstract}
+
+% The following sections are suggestive only.
+% Remove them or add your own.
+
+\section{Introduction}
+
+\section{Physical System}
+
+\section{Numerical Implementation}
+
+\section{Using This Thorn}
+
+\subsection{Obtaining This Thorn}
+
+\subsection{Basic Usage}
+
+\subsection{Special Behaviour}
+
+\subsection{Interaction With Other Thorns}
+
+\subsection{Examples}
+
+\subsection{Support and Feedback}
+
+\section{History}
+
+\subsection{Thorn Source Code}
+
+\subsection{Thorn Documentation}
+
+\subsection{Acknowledgements}
+
+
+\begin{thebibliography}{9}
+
+\end{thebibliography}
+
+% Do not delete next line
+% END CACTUS THORNGUIDE
+
+\end{document}
diff --git a/interface.ccl b/interface.ccl
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+# Interface definition for thorn PETSC
+# $Header$
+
+implements:PETSC
+inherits:
diff --git a/param.ccl b/param.ccl
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+# Parameter definitions for thorn PETSC
+# $Header$
diff --git a/petsc.sh b/petsc.sh
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+#! /bin/sh
+#/*@@
+#  @file   setup.sh
+#  @date   Fri 29 Aug 2003
+#  @author Thomas Radke
+#  @desc
+#          Setup for an external PETSc installation
+#  @enddesc
+# @@*/
+
+# /*@@
+#   @routine    CCTK_Search
+#   @date       Wed Jul 21 11:16:35 1999
+#   @author     Tom Goodale
+#   @desc
+#   Used to search for something in various directories
+#   @enddesc
+#@@*/
+                                                                                                                                                                             
+CCTK_Search()
+{
+  eval  $1=""
+  if test $# -lt 4 ; then
+    cctk_basedir=""
+  else
+    cctk_basedir="$4/"
+  fi
+  for cctk_place in $2
+    do
+#      echo $ac_n "  Looking in $cctk_place""...$ac_c" #1>&6
+      if test -r "$cctk_basedir$cctk_place/$3" ; then
+#        echo "$ac_t""... Found" #1>&6
+        eval $1="$cctk_place"
+        break
+      fi
+      if test -d "$cctk_basedir$cctk_place/$3" ; then
+#        echo "$ac_t""... Found" #1>&6
+        eval $1="$cctk_place"
+        break
+      fi
+#      echo "$ac_t"" No" #1>&6
+    done
+                                                                                                                                                                             
+  return
+}
+
+
+choose_petsc=`echo $PETSC | tr '[:upper:]' '[:lower:]'`
+
+# Work out PETSc's installation directory
+if [ -z "$PETSC_DIR" ]; then
+  CCTK_Search PETSC_DIR '/usr /usr/local /usr/local/petsc /usr/local/packages/petsc /usr/local/apps/petsc' include/petsc.h
+  if [ -z "$PETSC_DIR" ] ; then
+     exit 2
+  fi
+fi
+
+
+# Check what architecture is available
+if [ -z "$PETSC_ARCH" ]; then
+  if [ ! -d "$PETSC_DIR/lib/libg" ]; then
+    exit 2
+  fi
+  PETSC_ARCH=`/bin/ls -1 $PETSC_DIR/lib/libg | head -n1`
+fi
+
+# Set platform-specific libraries
+if [ -z "$PETSC_ARCH_LIBS" ]; then
+  case "$PETSC_ARCH" in
+    alpha) PETSC_ARCH_LIBS='dxml' ;;
+    IRIX64) PETSC_ARCH_LIBS='fpe blas complib.sgimath' ;;
+    linux)  PETSC_ARCH_LIBS='flapack fblas g2c mpich'  ;;
+    linux_intel) PETSC_ARCH_LIBS='mkl_lapack mkl_def guide' ;;
+    linux-gnu) PETSC_ARCH_LIBS='mkl_lapack mkl_def guide' ;;
+    linux64_intel) PETSC_ARCH_LIBS='mkl_lapack mkl guide' ;;
+    rs6000_64) PETSC_ARCH_LIBS='essl' ;;
+    *)           echo "  No PETSc support for architecture '$PETSC_ARCH' !"
+                 echo '  Please file a bug report to cactusmaint@cactuscode.org.'
+                 exit 2
+  esac
+fi
+
+# Set the PETSc libs, libdirs and includedirs
+PETSC_LIB_DIRS='$(PETSC_DIR)/lib/libO/$(PETSC_ARCH)'
+PETSC_INC_DIRS='$(PETSC_DIR)/include $(PETSC_DIR)/bmake/$(PETSC_ARCH)'
+PETSC_LIBS="petscts petscsnes petscsles petscdm petscmat petscvec petsc $PETSC_ARCH_LIBS"
+
+echo "BEGIN DEFINE"
+echo "#define CCTK_PETSC 1"
+echo "END DEFINE"
+
+echo "BEGIN DEFINITION"
+echo "HAVE_PETSC     = 1"
+echo "PETSC_DIR      = $PETSC_DIR"
+echo "PETSC_ARCH     = $PETSC_ARCH"
+echo "PETSC_LIBS     = $PETSC_LIBS"
+echo "PETSC_LIB_DIRS = $PETSC_LIB_DIRS"
+echo "PETSC_INC_DIRS = $PETSC_INC_DIRS"
+echo "END DEFINITION"
+
+
+echo 'LIBRARY $(PETSC_LIBS) X11 $(MPI_LIBS)'
+echo 'LIBRARY_DIRECTORY $(PETSC_LIB_DIRS) $(X_LIB_DIR)'
+echo 'INCLUDE_DIRECTORY $(PETSC_INC_DIRS)'
diff --git a/schedule.ccl b/schedule.ccl
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+# Schedule definitions for thorn PETSC
+# $Header$
diff --git a/src/make.code.defn b/src/make.code.defn
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+# Main make.code.defn file for thorn PETSC
+# $Header$
+
+# Source files in this directory
+SRCS = 
+
+# Subdirectories containing source files
+SUBDIRS =