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/*@@
@file WriteIsosurface.c
@date Sat Mar 25 2000
@author Thomas Radke
@desc
Output routine for isosurfaces in HDF5 fiber bundle format.
@enddesc
@version $Id$
@@*/
#include <stdlib.h>
#include <string.h>
#include "cctk.h"
#include "ioHDF5GH.h"
/* the rcs ID and its dummy funtion to use it */
static const char *rcsid = "$Header$";
CCTK_FILEVERSION(CactusPUGHIO_IOHDF5_WriteIsosurface_c)
#define SOCKET_URL_PREFIX "sock://"
#define SOCKET_URL_PREFIX_LEN (sizeof (SOCKET_URL_PREFIX) - 1)
/* this struct stores the current slice info for further queries */
typedef struct {
CCTK_INT iteration;
CCTK_INT timelevel;
} sliceInfo_t;
/*@@
@routine IOHDF5_WriteIsosurface
@author Thomas Radke
@date Sat Mar 25 2000
@calledby thorn CactusPUGHIO/IsoSurfacer
@var
@vdesc
@vtype
@vio
@vcomment
@endvar
@@*/
int IOHDF5_WriteIsosurface (cGH *GH,
const char *filename,
const char *GVname,
CCTK_INT iteration,
CCTK_INT timelevel,
CCTK_REAL isoval,
CCTK_REAL minval,
CCTK_REAL maxval,
int nTriangles,
CCTK_INT4 *triangles,
int nVertices,
CCTK_REAL4 *vertices)
{
hid_t h5file, plist;
hid_t aspace, dataspace, dataset;
hid_t group0, group1, group2, group3, group4;
hsize_t dim [2];
H5FD_stream_fapl_t fapl;
char sliceName [40], *isoVarname;
int isSocketURL;
sliceInfo_t *sliceInfo;
hobj_ref_t reference;
static pNamedData *isoFilesList = NULL;
static int first_called = 1;
static hid_t hdf5_string;
/* FIXME: should use the predefined type from iohdf5GH
but we cannot be sure that thorn IOHDF5 was activated */
if (first_called) {
first_called = 0;
/* predefine a C string datatype */
CACTUS_IOHDF5_ERROR (hdf5_string = H5Tcopy (H5T_C_S1));
}
CACTUS_IOHDF5_ERROR (plist = H5Pcreate (H5P_FILE_ACCESS));
isSocketURL = strncasecmp (filename, SOCKET_URL_PREFIX, SOCKET_URL_PREFIX_LEN) == 0;
if (isSocketURL)
{
#ifndef H5_HAVE_STREAM
CCTK_WARN (1, "The configured HDF5 installation doesn't include the Stream "
"VFD. No HDF5 streaming output available !");
CACTUS_IOHDF5_ERROR (H5Pclose (plist));
return (-1);
#else
/* set VFD to stream and open the file */
fapl.increment = 0;
fapl.socket = -1;
fapl.do_socket_io = 1;
fapl.backlog = 5;
fapl.broadcast_fn = NULL;
fapl.broadcast_arg = NULL;
CACTUS_IOHDF5_ERROR (H5Pset_fapl_stream (plist, &fapl));
sliceInfo = NULL;
#endif
}
else
{
sliceInfo = (sliceInfo_t *) GetNamedData (isoFilesList, filename);
}
/* create/open the file */
if (! sliceInfo)
CACTUS_IOHDF5_ERROR (h5file = H5Fcreate (filename, H5F_ACC_TRUNC,
H5P_DEFAULT, plist));
else
CACTUS_IOHDF5_ERROR (h5file = H5Fopen (filename, H5F_ACC_RDWR, plist));
if (h5file < 0) {
CCTK_VWarn (1, __LINE__, __FILE__, CCTK_THORNSTRING,
"Could not create/open output file '%s'", filename);
return (-1);
}
/* create a dataspace for storing scalar attributes */
CACTUS_IOHDF5_ERROR (aspace = H5Screate (H5S_SCALAR));
/* open the highest-level hierarchy which is group "Bundle" */
if (! sliceInfo)
CACTUS_IOHDF5_ERROR (group0 = H5Gcreate (h5file, "Bundle", 0));
else
CACTUS_IOHDF5_ERROR (group0 = H5Gopen (h5file, "Bundle"));
/* next level in hierarchy is the "Slice [<iteration>] [<timelevel>]" group */
sprintf (sliceName, "Slice [%d] [%d]", (int) iteration, (int) timelevel);
if (! sliceInfo ||
sliceInfo->iteration != iteration || sliceInfo->timelevel != timelevel) {
if (sliceInfo) {
sliceInfo->iteration = iteration;
sliceInfo->timelevel = timelevel;
}
CACTUS_IOHDF5_ERROR (group1 = H5Gcreate (group0, sliceName, 0));
WRITE_ATTRIBUTE ("time", &GH->cctk_time, group1, aspace, 0,IOHDF5_REAL);
WRITE_ATTRIBUTE ("timestep", &iteration, group1, aspace, 0, IOHDF5_INT);
WRITE_ATTRIBUTE ("timelevel", &timelevel, group1, aspace, 0,IOHDF5_INT);
} else
CACTUS_IOHDF5_ERROR (group1 = H5Gopen (group0, sliceName));
/* third level is a group for each grid variable with specific isovalue */
isoVarname = (char *) malloc (strlen (GVname) + 40);
sprintf (isoVarname, "Isolevel [%s] [%.10f]", GVname, (double) isoval);
CACTUS_IOHDF5_ERROR (group2 = H5Gcreate (group1, isoVarname, 0));
free (isoVarname);
/* fourth level is group "PointTopology" */
CACTUS_IOHDF5_ERROR (group3 = H5Gcreate (group2, "PointTopology", 0));
/* fifth level is group "Representation" */
CACTUS_IOHDF5_ERROR (group4 = H5Gcreate (group3, "Representation [CartesianChart]", 0));
#if 0
if (IsoL.Ncolorinfo > 0) {
dim [0] = (hsize_t) IsoL.Ncolorinfo;
CACTUS_IOHDF5_ERROR (dataspace = H5Screate_simple (1, dim, NULL));
CACTUS_IOHDF5_ERROR (dataset = H5Dcreate (h5file, "ColorMap",
IOHDF5_REAL4, dataspace, H5P_DEFAULT));
CACTUS_IOHDF5_ERROR (H5Dwrite (dataset, IOHDF5_REAL4, H5S_ALL,
H5S_ALL, H5P_DEFAULT, &IsoL.colorinfo));
CACTUS_IOHDF5_ERROR (H5Dclose (dataset));
CACTUS_IOHDF5_ERROR (H5Sclose (dataspace));
}
#endif
/* write vertices */
dim [0] = (hsize_t) nVertices;
dim [1] = 3;
CACTUS_IOHDF5_ERROR (dataspace = H5Screate_simple (2, dim, NULL));
CACTUS_IOHDF5_ERROR (dataset = H5Dcreate (group4, "Positions",
IOHDF5_REAL4, dataspace, H5P_DEFAULT));
CACTUS_IOHDF5_ERROR (H5Dwrite (dataset, IOHDF5_REAL4, H5S_ALL,
H5S_ALL, H5P_DEFAULT, vertices));
WRITE_ATTRIBUTE ("data_min", &minval, dataset, aspace, 0, IOHDF5_REAL);
WRITE_ATTRIBUTE ("data_max", &maxval, dataset, aspace, 0, IOHDF5_REAL);
#if 0
WRITE_ATTRIBUTE ("instance", &isoindex, isogroup, aspace, 0, IOHDF5_INT);
#endif
CACTUS_IOHDF5_ERROR (H5Rcreate (&reference, group4, "Positions", H5R_OBJECT, -1));
CACTUS_IOHDF5_ERROR (H5Dclose (dataset));
CACTUS_IOHDF5_ERROR (H5Sclose (dataspace));
WRITE_ATTRIBUTE ("Domain", "CartesianChart", group4, aspace, 0, hdf5_string);
CACTUS_IOHDF5_ERROR (H5Gclose (group4));
CACTUS_IOHDF5_ERROR (H5Gclose (group3));
/* fourth level is group "Connectivity" */
CACTUS_IOHDF5_ERROR (group3 = H5Gcreate (group2, "Connectivity", 0));
/* fifth level is group "Representation" */
CACTUS_IOHDF5_ERROR (group4 = H5Gcreate (group3, "Representation [PointTopology]", 0));
/* write polygons */
dim [0] = (hsize_t) nTriangles;
dim [1] = 3;
CACTUS_IOHDF5_ERROR (dataspace = H5Screate_simple (2, dim, NULL));
CACTUS_IOHDF5_ERROR (dataset = H5Dcreate (group4, "Positions",
IOHDF5_INT4, dataspace, H5P_DEFAULT));
CACTUS_IOHDF5_ERROR (H5Dwrite (dataset, IOHDF5_INT4, H5S_ALL,
H5S_ALL, H5P_DEFAULT, triangles));
CACTUS_IOHDF5_ERROR (H5Dclose (dataset));
CACTUS_IOHDF5_ERROR (H5Sclose (dataspace));
WRITE_ATTRIBUTE ("Domain", &reference, group4, aspace, 0, H5T_STD_REF_OBJ);
CACTUS_IOHDF5_ERROR (H5Glink(group4, H5G_LINK_SOFT,
"../../PointTopology/Representation [CartesianChart]/Positions", "Domain"));
CACTUS_IOHDF5_ERROR (H5Sclose (aspace));
CACTUS_IOHDF5_ERROR (H5Gclose (group4));
CACTUS_IOHDF5_ERROR (H5Gclose (group3));
CACTUS_IOHDF5_ERROR (H5Gclose (group2));
CACTUS_IOHDF5_ERROR (H5Gclose (group1));
CACTUS_IOHDF5_ERROR (H5Gclose (group0));
CACTUS_IOHDF5_ERROR (H5Fclose (h5file));
/* if this was a newly created file add it to the list of open files */
if (! isSocketURL && ! sliceInfo) {
sliceInfo_t *newInfo = (sliceInfo_t *) malloc (sizeof (sliceInfo_t));
newInfo->iteration = iteration;
newInfo->timelevel = timelevel;
StoreNamedData (&isoFilesList, filename, newInfo);
}
return (0);
}
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