| Commit message (Collapse) | Author | Age |
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Use hg::baseextent instead of Carpet::maxspacereflevelfact to
determine the stride of a refinement level, because this works
independent of the stride on the finest level.
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in an H5E_BEGIN_TRY H5E_END_TRY environment. This prevents
hate crimes.
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rather than always ocuring together with the old-style 3D output.
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right now there is no support for hdf5 files in testsuites so users will
have to manually use 'h5diff -v' and 'h5dump -r' to compare and test the
output when changes are made to the code
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to compute the hyperslab one needs to base its location on the extent of the
data in memory not in the extent that we want to output.
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* add some attributes to metadata to match what the old code wrote
* only tag object names with components of there are more than one
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This is implemented by re-computing the allactive bboxset that dh::regrid
computes and outputting only the part of each component that intersects
allactive. This changes the number of components since the intersection
might be non-rectangular-box.
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add code to honor IO::ioproc_every to output data unchunked (for 3d output
only)
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Register new-style output code as an IO method with IOUtil for 3d output.
The new code is not quite as capable as the old code, since it does not
include Ian Hinder's indexing facility and so far outputs all data on the
root processor. It does support the new-style output_symmetry_points etc.
options however.
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Recovery happens level-by-level in Cactus. When recovering the
refinement level times and the global time, set them correctly
according to the current refinement level.
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Scanning the attributes of a large CarpetIOHDF5 output file, as is
necessary in the visitCarpetHDF5 plugin, can be very time consuming.
This commit adds support for writing an "index" HDF5 file at the same
time as the data file, conditional on a parameter
"CarpetIOHDF5::output_index". The index file is the same as the data
file except it contains null datasets, and hence is very small. The
attributes can be read from this index file instead of the data file,
greatly increasing performance. The datasets will have size 1 in the
index file, so an additional attribute (h5space) is added to the
dataset to specify the correct dataset dimensions.
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Initialise the times of all time levels of grid arrays while
recovering.
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When checkpoints of initial data are disabled, but termination
checkpoints are enabled, then do checkpoint the initial data.
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Store the current Cactus time (and not a fake Carpet time) in the th
"time hiearchy". This removes the now redundant "leveltimes" data
structure in Carpet.
Add past time levels to th, so that it can store the time for past
time levels instead of assuming the time step size is constant. This
allows changing the time step size during evolution.
Share the time hierarchy between all maps, instead of having one time
hierarchy per map.
Simplify the time level cycling and time stepping code used during
evolution.
Improve structure of the code that loops over time levels for certain
schedule bins. Introduce a new Carpet variable "timelevel", similar
to "reflevel".
This also makes it possible to avoid time interpolation for the past
time levels during regridding. The past time levels of the fine grid
then remain aligned (in time) with the past time levels of the coarse
grid. This is controlled by a new parameter
"time_interpolation_during_regridding", which defaults to "yes" for
backwards compatibility.
Simplify the three time level initialisation. Instead of initialising
all three time levels by taking altogether three time steps (forwards
and backwards), initialise only one past time level by taking one time
step backwards. The remaining time level is initialised during the
first time step of the evolution, which begins by cycling time levels,
which drops the non-initialised last time level anyway.
Update Carpet and the mode handling correspondingly.
Update the CarpetIOHDF5 checkpoint format correspondingly.
Update CarpetInterp, CarpetReduce, and CarpetRegrid2 correspondingly.
Update CarpetJacobi and CarpetMG correspondingly.
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single mechanism provided by CarpetLib.
Use this mechanism everywhere.
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Allow different numbers of ghost zones and different spatial
prolongation orders on different refinement levels.
This causes incompatible changes to the checkpoint file format.
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Serialise the time hierarchy with 17 digits of accuracy, instead of
the standard 6 digits. This is required for correctly recovering the
time hierarchy.
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Rename out3D_ghosts to output_ghost_points. Rename out3D_outer_ghosts
to output_boundary_points. Keep the old parameter name for
compatibility.
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Output a warning message if multiple input files need to be read from
one MPI process, since this is usually very slow. When reading files
from the same number of processes that wrote them, each process is
only supposed to need to open one file.
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Ignore-this: e7d15a216ec4fbb524f1ebe1fdeff905
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Ignore-this: 9e10c4fe3b231a3913fca9572d319474
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Ignore-this: 309b4dd613f4af2b84aa5d6743fdb6b3
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Due to a wrong upper range in the time hierarchy initialisation loop, only maps on the coarsest refinement level were initialised. This caused an assertion failure when recovering multiple refinement levels which weren't aligned.
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simulation with a proper error message (rather than just an assertion failure)
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example and testsuite parfiles
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needed by OpenDX and VisIt
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Carpet HDF5 output data. The slice data are output in HDF5 again.
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