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* CarpetIOHDF5: Add a timer around OutputGHErik Schnetter2007-08-25
| | | | darcs-hash:20070825060808-dae7b-9ea6675a36f9230332067acdb705d48e75d12fd2.gz
* CarpetIOHDF5: Initialise list of variables which need to be synchronisedErik Schnetter2007-08-23
| | | | | | | Initialise the list of variables which need to be synchronised after recovery correctly. darcs-hash:20070823210422-dae7b-31da5366355d1bfbea2e4181b8639c5b4e6caf0c.gz
* CarpetIOHDF5: Synchronise after recoveringErik Schnetter2007-06-08
| | | | | | | Synchronise the recovered grid functions. This removes the need for calling the postregrid bin after recovering. darcs-hash:20070608201848-dae7b-4d2044344f7e8e9a30ca60780199f2906a58d957.gz
* CarpetIOHDF5: Add utility HDF5-to-ASCII converter againErik Schnetter2007-05-30
| | | | | | The HDF5-to-ASCII converter was accidentally removed. darcs-hash:20070530133215-dae7b-b1da3480a9a963ad78bc8cf02f5150389e19d286.gz
* CarpetIOHDF5: Remove make.configuration.defnErik Schnetter2006-08-08
| | | | | | | Remove the make.configuration.defn file. Configuration dependencies are now handled by the configuration.ccl file. darcs-hash:20060808151859-dae7b-525b7e54c2f3c771bba2acdb7b11c9fd0c1dc8c6.gz
* CarpetIOHDF5: Require capability HDF5Erik Schnetter2005-11-19
| | | | | | | Require the capability HDF5 instead of testing whether HDF5 was configured in. darcs-hash:20051119212528-dae7b-5600109d2e5fc5c89477fd1b4a978d39f3aed555.gz
* CarpetIOHDF5: Say "simulation time" instead of "physical time"Erik Schnetter2007-05-23
| | | | darcs-hash:20070523204447-dae7b-364638404dec31fbf3f0db103d930fc60c13ad65.gz
* CarpetIOHDF5: Output unsuccessful file names when reading initial dataErik Schnetter2007-05-23
| | | | | | | | | When no files can be found when reading initial data from files, then output all files names that were tried. Since the file names are constructed dynamically, this makes it easier to find errors in parameter files. darcs-hash:20070523204234-dae7b-676f945408731a162d2795ab2559b012eaf4fcaf.gz
* CarpetIOHDF5: Make use_grid_structure_from_checkpoint the defaultErik Schnetter2007-05-23
| | | | | | | Make CarpetIOHDF5::use_grid_structure_from_checkpoint=yes the default setting. darcs-hash:20070523204057-dae7b-80c06a4a883db327ce7768f3363ebccfbc3b0dd6.gz
* CarpetIOHDF5: add option to output one file per grouptradke2007-04-30
| | | | | | | | A new steerable boolean parameter IOHDF5::out_one_file_per_group was added which - if set to "true" - will cause Cactus to output all variables of a group into a single HDF5 file (useful to reduce the total number of output files). darcs-hash:20070430162902-3fd61-f8c3e4cd641c40e8afe859933e611cda50c52efe.gz
* CarpetIOHDF5: Correct error in setting up gdata communication objectErik Schnetter2007-05-01
| | | | | | Set up gdata object correctly before copying it between processors. darcs-hash:20070501163757-dae7b-55cb3575d707f88806bff70f4cfc7153de879c1f.gz
* CarpetIOHDF5: Checkpoint and restore each level's current timeErik Schnetter2007-04-19
| | | | darcs-hash:20070419021113-dae7b-baa8e7a012bddab40246f9485d5b3987fd7dc587.gz
* CarpetIOHDF5: Allow IO::out_dir to be steerableErik Schnetter2007-04-19
| | | | darcs-hash:20070419021042-dae7b-fa34acf3bf956f5b07a74e882f1cb0663f2826dd.gz
* CarpetIOHDF5: abort after I/O errors if requested by the userThomas Radke2007-04-18
| | | | | | | | | | | | By setting the new steerable boolean parameter IO::abort_on_io_errors to true in a parfile, the user can now tell the simulation to abort in case of any I/O errors while writing HDF5 output/checkpoint files. The default is to only warn about such errors and continue the simulation. This patch requires an up-to-date CVS version of thorn CactusBase/IOUtil from which the parameter IO::abort_on_io_errors is inherited. darcs-hash:20070418155052-776a0-554152ad445c5215daac96e8fa2b55f06318d0c1.gz
* CarpetIOHDF5: omit sum norms in the testsuites' reduction outputThomas Radke2007-02-23
| | | | | | | | | In order to make the recovery testsuites pass, one would have to specify a rather large absolute tolerance for the sum norms. Since this isn't possible for an individual norm, I decided to omit the output of sum norms entirely. darcs-hash:20070223165809-776a0-83dbbb59855996cec51bd6b9da945d4bf467bd4e.gz
* CarpetIOHDF5: added missing include in hdf5toascii_slicer.ccThomas Radke2007-02-21
| | | | | | | In order to compile the hdf5toascii_slicer utility program on an IBM SP5 using xlC, the source code also needs to include <string>. darcs-hash:20070221174117-776a0-c791309492972a552d19541054d5e7e74a15052e.gz
* CarpetIOHDF5: Point to HDF5 web siteErik Schnetter2007-02-04
| | | | darcs-hash:20070204212255-dae7b-3fb713d97921718ff67bedd7382f49ca10c40751.gz
* CarpetIOHDF5: specify the number of processors to run testsuitesThomas Radke2007-01-18
| | | | | | | | | Some of CarpetIOHDF5's testsuites produce CarpetIOASCII output files which format is always dependent on the number of processors used. In the newly added test.ccl configuration file this number is explicitely specified for running the testsuites successfully. darcs-hash:20070118100106-776a0-1317671e489dd815dafd7c4e376f9d5dcc45c552.gz
* CarpetIOHDF5: Adapt to region_t changesErik Schnetter2007-01-12
| | | | | | | | Adapt to region_t changes. Use the type region_t instead of gridstructure_t. This is an incompatible change to the format of HDF5 files. darcs-hash:20070112223732-dae7b-9f2527492cffa6f929a9dd32604713267621d7fb.gz
* CarpetIOHDF5: Do not use "map" as local variable nameErik Schnetter2007-01-12
| | | | | | | | Use "m" instead of "map" as local variable name. Remove "Carpet::" qualifier in front of variable "maps". darcs-hash:20070112224022-dae7b-0c5241b73c1f4a8ff4722e04bc70ed047d6158da.gz
* CarpetIOHDF5: support per-variable output compression levelsThomas Radke2006-11-17
| | | | | | | | | | | | | | | | | Implement variable-specific output request option 'compression_level' so that users can specify eg. IOHDF5::compression_level = 1 IOHDF5::out_vars = "admbase::metric admconstraints::hamiltonian admbase::lapse{ compression_level = 0 }" to request HDF5 dataset compression for every output variable except for the lapse. This modification also requires an update of thorn CactusBase/IOUtil. darcs-hash:20061117132206-776a0-0e1d07a85cf206fa262a94fd0dd63c6f27e50fa2.gz
* CarpetIOHDF5: support automatic gzip dataset compressionThomas Radke2006-11-17
| | | | | | | | | With the new steerable integer parameter IOHDF5::compression_level users can now request gzip dataset compression while writing HDF5 files: levels from 1-9 specify a specific compression rate, 0 (which is the default) disables dataset compression. darcs-hash:20061117115153-776a0-7aaead5d2a0216841a27e091fddb9b6c4f40eed4.gz
* CarpetIOHDF5: hdf5toascii_slicer now also provides 0D and 3D outputThomas Radke2006-10-05
| | | | darcs-hash:20061005133135-776a0-1550cde9db6e0a375b661b2ab6b0ed9c762bbe9d.gz
* CarpetIOHDF5: use aliased function Coord_GroupSystem() only optionallyThomas Radke2006-10-04
| | | | | | | If no thorn provided this aliased function, CarpetIOHDF5 assumes that no coordinate information is available. darcs-hash:20061004144616-776a0-00da12cca7d6b6ad1ae0a38a96923f771239de79.gz
* CarpetIOHDF5: Use new regridding API when recoveringErik Schnetter2006-09-25
| | | | darcs-hash:20060925220348-dae7b-303594fd2b999c93d2b816a9d3f11d0d97e391c2.gz
* CarpetIOHDF5: Cast size_t to int explicitlyErik Schnetter2006-09-25
| | | | darcs-hash:20060925220323-dae7b-040ddfb0afc83c15cd4802fe26fe4822826a2e8a.gz
* CarpetIOHDF5: Save grid structure in the output filesErik Schnetter2006-09-25
| | | | | | | Save grid structure in the output files whenever the parameters are saved, even when it is not a checkpoint file. darcs-hash:20060925220235-dae7b-09e23cc6ec48e20df0b560356f19648a67e955dd.gz
* CarpetIOHDF5: Add missing #include <cstring>Erik Schnetter2006-09-25
| | | | darcs-hash:20060925220415-dae7b-2b72aef51ae3d8b056b18221acd9989668a2864d.gz
* CarpetIOHDF5: fix filereader testsuiteThomas Radke2006-09-15
| | | | | | | | | | | | | | | Update the filereader testsuite so that it passes again, also on multiple processors. Added output of more norms for comparison. The testsuite was broken because its norms output files had been created by CactusBase/IOBasic. Temporarily going back to using that I/O thorn verified that the testsuite still gave the same results. After updating the parfile to use Carpet's scalar output method, both the output filenames changed (hence the removing of old output files and adding new ones) as well as their data contents - the latter due to CarpetIOScalar calling CCTK_Reduce() in global mode and CactusBase/IOBasic calling it in level mode. darcs-hash:20060915115726-776a0-dbf8ce75815a6e302b90dbd799c1e0e56274da43.gz
* CarpetIOHDF5: fix testsuites so that they use proper nesting of gridsThomas Radke2006-09-11
| | | | | | | | | | | | | Doubled Driver::global_nsize in order to get the grids properly nested. This requires an update of the checkpoint and all output files. While both CarpetWaveToyRecover_test_[14]proc testsuites continue to work the CarpetWaveToyNewRecover_test_1proc is still broken, although it should give exactly the same results as CarpetWaveToyRecover_test_1proc. It needs to be investigated that IOHDF5::use_reflevels_from_checkpoint really works as expected. darcs-hash:20060911164811-776a0-70a5d06de9506fa4ea68672ed5776c0b236546d0.gz
* CarpetIOHDF5: get both CarpetWaveToyRecover_test_[14]proc testsuites working ↵Thomas Radke2006-09-11
| | | | | | | | | | | | | | | | | again This patch partially undoes patch 'CarpetIOHDF5: Add test case for grid structure recovery' (recorded Mon May 8 21:46:21 CEST 2006) by * renewing the checkpoint file (containing same data as before above's patch, now with grid structure added) * fixing the 1D output files (by removing comment lines which aren't output anymore by CarpetIOASCII) It leaves the CarpetWaveToyNewRecover_test_1proc testsuite unchanged, ie. broken as it was from the beginning. darcs-hash:20060911160325-776a0-5339d1271436f39e6d9c2fc55e136bcbf9f5fe4e.gz
* CarpetIOHDF5: added new option '--match <regex string>' in hdf5toascii_slicerThomas Radke2006-09-01
| | | | | | | | | | | | ../exe/wave/hdf5toascii_slicer [--match <regex string>] ... where [--match <regex string>] selects HDF5 datasets by their names matching a regex string using POSIX Extended Regular Expression syntax darcs-hash:20060901085302-776a0-3a9cfb71f9008b1a7bf93d9857195f92b67f1e25.gz
* CarpetIOHDF5: add support for integer datasets in hdf5toascii_slicerThomas Radke2006-08-31
| | | | darcs-hash:20060831174548-776a0-bf352f210d8736f48a666654309f0ad3443cf3a3.gz
* CarpetIOHDF5: hdf5toascii_slicer now allows 1D line extraction from 3D HDF5 ↵Thomas Radke2006-08-28
| | | | | | files darcs-hash:20060828173429-776a0-b231124b73645983b8ed56efa35d5ec2c9354add.gz
* CarpetIOHDF5: clarify documentation on chunked vs unchunked outputJonathan Thornburg2006-08-22
| | | | darcs-hash:20060822160245-b0a3f-a52dbe5f5276995324eade2d0648af4e1388c964.gz
* CarpetIOHDF5: more clearly describe in the thorn documentation what chunked ↵Thomas Radke2006-08-22
| | | | | | and unchunked HDF5 output means darcs-hash:20060822153832-776a0-73ab7e8afc9dd02bfeea6269e7d21f2cdb0c7357.gz
* CarpetIOHDF5: correct URL for Cactus viztoolsJonathan Thornburg2006-08-22
| | | | darcs-hash:20060822144417-b0a3f-a1053a60b369e646b2dba3d0470cc4196d64de0e.gz
* CarpetIOHDF5: point to more docs on hdf5toascii_slicer programJonathan Thornburg2006-08-22
| | | | darcs-hash:20060822143002-b0a3f-d2a21d30f28261ad7248cf44a5928b2a38be9b68.gz
* CarpetIOHDF5: make hdf5toascii_slicer --help output more informativeJonathan Thornburg2006-08-22
| | | | | | | Clarify an ambiguity in the --help output: timestep selection is by cctk_time value, not by cctk_iteration darcs-hash:20060822142353-b0a3f-e0ad1ea0e2f4eca7038fc2d77b0ff3d724b97aab.gz
* CarpetIOHDF5: add missing #include to hdf5toascii_slicer utilityJonathan Thornburg2006-08-22
| | | | | | Adds a missing #include <cmath> so std::fabs() can be used darcs-hash:20060822114437-b0a3f-f85a976d02c36aa6311c7b6916aad107747954b2.gz
* CarpetIOHDF5: add timestep selection to hdf5toascii_slicer utilityThomas Radke2006-08-21
| | | | | | | The new command line parameter option '--timestep <timestep>' allows users to select an individual timestep in an HDF5 file. darcs-hash:20060821200601-776a0-8e977e93014eded2d6f6cab376209ce7d4293b94.gz
* CarpetIOHDF5: fix g++ compiler error and warnings in hdf5toascii_slicer.ccThomas Radke2006-08-21
| | | | | | | | While Intel C++ (9.0) had no problems compiling hdf5toascii_slicer.cc at all, GNU C++ generates an error when assigning -424242424242 to a long int. Also fixed some other things that g++ warns about. darcs-hash:20060821094951-776a0-84d68b511de0bbd65b212755d699a415779c9674.gz
* CarpetIOHDF5: #include <algorithm> in hdf5toascii_slicer.cc because sort() ↵Erik Schnetter2006-08-17
| | | | | | is used darcs-hash:20060817173012-dae7b-857f1313b12144e1ba997d029990a0464bb36df5.gz
* CarpetIOHDF5: added make.configuration.deps with rules to build utility programsThomas Radke2006-08-14
| | | | darcs-hash:20060814142824-776a0-1553d2404adc099fea75b546d4169f184dc5d3ab.gz
* CarpetIOHDF5: list the options in an option string supported by CarpetIOHDF5Thomas Radke2006-08-14
| | | | darcs-hash:20060814121029-776a0-279fb0650475bb7a3f53bc74124a42c951c2aa10.gz
* CarpetIOHDF5: document utility programs for CarpetIOHDF5 data processingThomas Radke2006-08-08
| | | | darcs-hash:20060808143907-776a0-965984d0fe8688c51fe0a5d9bf8d1dfd51a3eb8a.gz
* CarpetIOHDF5: added utility program hdf5toascii_slicerThomas Radke2006-08-08
| | | | | | | This utility program extracts 2D slices from CarpetIOHDF5 output files and prints them to stdout in CarpetIOASCII format. darcs-hash:20060808123300-776a0-4088993ec64ad291510977ee5c10d521863ef2ac.gz
* CarpetIOHDF5: fix bug in deletion of recovery fileThomas Radke2006-06-26
| | | | | | | | | | | Due to bug in my previous patch, the logic for removing the checkpoint file after successful recovery was wrong: it was removed if IO::recover_and_remove was set to "false". This patch fixes this bug by reversing the logic. Thanks to Ian Hinder for noticing this and presenting the fix. darcs-hash:20060626162548-776a0-8d3ebc0c43a74cb3faa892aa2a410e13bb37825e.gz
* CarpetIOHDF5: Remove unused local variableErik Schnetter2006-06-13
| | | | darcs-hash:20060613171412-dae7b-cf8a7c6112d6c364bd7f4e7568e0df2c683c01f3.gz
* CarpetIOHDF5: evaluate IO::recover_and_remove parameterThomas Radke2006-06-07
| | | | | | | If IO::recover_and_remove is set, the recovery file will also be removed after IO::checkpoint_keep successful checkpoints have been written. darcs-hash:20060607102431-776a0-92edd93f6dc004ab824b237fbd03ee732f7a3841.gz
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