Fixed many many bugs and typos. (Many more remain.) Cleaned up

numerous sections.  Added some clarifications.

Closes Cactus/508 (I think, though he mentioned a section which doesn't seem to exist).
Partly closes Cactus/696.


git-svn-id: http://svn.cactuscode.org/flesh/trunk@2508 17b73243-c579-4c4c-a9d2-2d5706c11dac

1 files changed, 360 insertions, 0 deletions

diff --git a/doc/UsersGuide/withghost.eps b/doc/UsersGuide/withghost.eps
new file mode 100644
index 00000000..cfc126d3
--- /dev/null
+++ b/doc/UsersGuide/withghost.eps
@@ -0,0 +1,360 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: withghost.eps
+%%Creator: fig2dev Version 3.2 Patchlevel 3c
+%%CreationDate: Fri Dec  7 09:58:03 2001
+%%For: rideout@nbdell05.aei.mpg.de (David P. Rideout)
+%%BoundingBox: 0 0 615 225
+%%Magnification: 1.0000
+%%EndComments
+/$F2psDict 200 dict def
+$F2psDict begin
+$F2psDict /mtrx matrix put
+/col-1 {0 setgray} bind def
+/col0 {0.000 0.000 0.000 srgb} bind def
+/col1 {0.000 0.000 1.000 srgb} bind def
+/col2 {0.000 1.000 0.000 srgb} bind def
+/col3 {0.000 1.000 1.000 srgb} bind def
+/col4 {1.000 0.000 0.000 srgb} bind def
+/col5 {1.000 0.000 1.000 srgb} bind def
+/col6 {1.000 1.000 0.000 srgb} bind def
+/col7 {1.000 1.000 1.000 srgb} bind def
+/col8 {0.000 0.000 0.560 srgb} bind def
+/col9 {0.000 0.000 0.690 srgb} bind def
+/col10 {0.000 0.000 0.820 srgb} bind def
+/col11 {0.530 0.810 1.000 srgb} bind def
+/col12 {0.000 0.560 0.000 srgb} bind def
+/col13 {0.000 0.690 0.000 srgb} bind def
+/col14 {0.000 0.820 0.000 srgb} bind def
+/col15 {0.000 0.560 0.560 srgb} bind def
+/col16 {0.000 0.690 0.690 srgb} bind def
+/col17 {0.000 0.820 0.820 srgb} bind def
+/col18 {0.560 0.000 0.000 srgb} bind def
+/col19 {0.690 0.000 0.000 srgb} bind def
+/col20 {0.820 0.000 0.000 srgb} bind def
+/col21 {0.560 0.000 0.560 srgb} bind def
+/col22 {0.690 0.000 0.690 srgb} bind def
+/col23 {0.820 0.000 0.820 srgb} bind def
+/col24 {0.500 0.190 0.000 srgb} bind def
+/col25 {0.630 0.250 0.000 srgb} bind def
+/col26 {0.750 0.380 0.000 srgb} bind def
+/col27 {1.000 0.500 0.500 srgb} bind def
+/col28 {1.000 0.630 0.630 srgb} bind def
+/col29 {1.000 0.750 0.750 srgb} bind def
+/col30 {1.000 0.880 0.880 srgb} bind def
+/col31 {1.000 0.840 0.000 srgb} bind def
+
+end
+save
+newpath 0 225 moveto 0 0 lineto 615 0 lineto 615 225 lineto closepath clip newpath
+-107.0 338.0 translate
+1 -1 scale
+
+/cp {closepath} bind def
+/ef {eofill} bind def
+/gr {grestore} bind def
+/gs {gsave} bind def
+/sa {save} bind def
+/rs {restore} bind def
+/l {lineto} bind def
+/m {moveto} bind def
+/rm {rmoveto} bind def
+/n {newpath} bind def
+/s {stroke} bind def
+/sh {show} bind def
+/slc {setlinecap} bind def
+/slj {setlinejoin} bind def
+/slw {setlinewidth} bind def
+/srgb {setrgbcolor} bind def
+/rot {rotate} bind def
+/sc {scale} bind def
+/sd {setdash} bind def
+/ff {findfont} bind def
+/sf {setfont} bind def
+/scf {scalefont} bind def
+/sw {stringwidth} bind def
+/tr {translate} bind def
+/tnt {dup dup currentrgbcolor
+  4 -2 roll dup 1 exch sub 3 -1 roll mul add
+  4 -2 roll dup 1 exch sub 3 -1 roll mul add
+  4 -2 roll dup 1 exch sub 3 -1 roll mul add srgb}
+  bind def
+/shd {dup dup currentrgbcolor 4 -2 roll mul 4 -2 roll mul
+  4 -2 roll mul srgb} bind def
+/$F2psBegin {$F2psDict begin /$F2psEnteredState save def} def
+/$F2psEnd {$F2psEnteredState restore end} def
+
+$F2psBegin
+%%Page: 1 1
+10 setmiterlimit
+ 0.06000 0.06000 sc
+%
+% Fig objects follow
+%
+% Polyline
+15.000 slw
+n 7075 4000 m
+ 6675 4400 l gs col4 s gr 
+% Polyline
+n 6650 4000 m
+ 7050 4400 l gs col4 s gr 
+% Polyline
+n 7750 4000 m
+ 7350 4400 l gs col4 s gr 
+% Polyline
+n 7400 4000 m
+ 7800 4400 l gs col4 s gr 
+% Polyline
+n 7075 2800 m
+ 6675 3200 l gs col4 s gr 
+% Polyline
+n 6650 2800 m
+ 7050 3200 l gs col4 s gr 
+% Polyline
+n 7750 2800 m
+ 7350 3200 l gs col4 s gr 
+% Polyline
+n 7400 2800 m
+ 7800 3200 l gs col4 s gr 
+% Polyline
+gs  clippath
+2711 4439 m 2661 4548 l 2983 4697 l 2736 4517 l 3033 4588 l cp
+eoclip
+n 4650 5400 m
+ 2700 4500 l gs col0 s gr gr
+
+% arrowhead
+n 3033 4588 m 2736 4517 l 2983 4697 l 2953 4617 l 3033 4588 l 
+ cp gs 0.00 setgray ef gr  col0 s
+% Polyline
+gs  clippath
+2010 3135 m 1890 3135 l 1890 3490 l 1950 3190 l 2010 3490 l cp
+eoclip
+n 1950 3750 m
+ 1950 3150 l gs col0 s gr gr
+
+% arrowhead
+n 2010 3490 m 1950 3190 l 1890 3490 l 1950 3430 l 2010 3490 l 
+ cp gs 0.00 setgray ef gr  col0 s
+% Polyline
+n 2400 4200 m
+ 6600 4200 l gs col0 s gr 
+% Polyline
+n 2900 4000 m
+ 2500 4400 l gs col4 s gr 
+% Polyline
+n 2500 4000 m
+ 2900 4400 l gs col4 s gr 
+% Polyline
+n 3500 4000 m
+ 3100 4400 l gs col4 s gr 
+% Polyline
+n 3100 4000 m
+ 3500 4400 l gs col4 s gr 
+% Polyline
+n 4100 4000 m
+ 3700 4400 l gs col4 s gr 
+% Polyline
+n 3700 4000 m
+ 4100 4400 l gs col4 s gr 
+% Polyline
+n 4700 4000 m
+ 4300 4400 l gs col4 s gr 
+% Polyline
+n 4300 4000 m
+ 4700 4400 l gs col4 s gr 
+% Polyline
+n 5300 4000 m
+ 4900 4400 l gs col4 s gr 
+% Polyline
+n 4900 4000 m
+ 5300 4400 l gs col4 s gr 
+% Polyline
+n 5900 4000 m
+ 5500 4400 l gs col4 s gr 
+% Polyline
+n 5500 4000 m
+ 5900 4400 l gs col4 s gr 
+% Polyline
+n 6500 4000 m
+ 6100 4400 l gs col4 s gr 
+% Polyline
+n 6100 4000 m
+ 6500 4400 l gs col4 s gr 
+% Polyline
+n 7800 4200 m
+ 12000 4200 l gs col0 s gr 
+% Polyline
+n 8300 4000 m
+ 7900 4400 l gs col4 s gr 
+% Polyline
+n 7900 4000 m
+ 8300 4400 l gs col4 s gr 
+% Polyline
+n 8900 4000 m
+ 8500 4400 l gs col4 s gr 
+% Polyline
+n 8500 4000 m
+ 8900 4400 l gs col4 s gr 
+% Polyline
+n 9500 4000 m
+ 9100 4400 l gs col4 s gr 
+% Polyline
+n 9100 4000 m
+ 9500 4400 l gs col4 s gr 
+% Polyline
+n 10100 4000 m
+ 9700 4400 l gs col4 s gr 
+% Polyline
+n 9700 4000 m
+ 10100 4400 l gs col4 s gr 
+% Polyline
+n 10700 4000 m
+ 10300 4400 l gs col4 s gr 
+% Polyline
+n 10300 4000 m
+ 10700 4400 l gs col4 s gr 
+% Polyline
+n 11300 4000 m
+ 10900 4400 l gs col4 s gr 
+% Polyline
+n 10900 4000 m
+ 11300 4400 l gs col4 s gr 
+% Polyline
+n 11900 4000 m
+ 11500 4400 l gs col4 s gr 
+% Polyline
+n 11500 4000 m
+ 11900 4400 l gs col4 s gr 
+% Polyline
+n 2400 3000 m
+ 6600 3000 l gs col0 s gr 
+% Polyline
+n 2900 2800 m
+ 2500 3200 l gs col4 s gr 
+% Polyline
+n 2500 2800 m
+ 2900 3200 l gs col4 s gr 
+% Polyline
+n 3500 2800 m
+ 3100 3200 l gs col4 s gr 
+% Polyline
+n 3100 2800 m
+ 3500 3200 l gs col4 s gr 
+% Polyline
+n 4100 2800 m
+ 3700 3200 l gs col4 s gr 
+% Polyline
+n 3700 2800 m
+ 4100 3200 l gs col4 s gr 
+% Polyline
+n 4700 2800 m
+ 4300 3200 l gs col4 s gr 
+% Polyline
+n 4300 2800 m
+ 4700 3200 l gs col4 s gr 
+% Polyline
+n 5300 2800 m
+ 4900 3200 l gs col4 s gr 
+% Polyline
+n 4900 2800 m
+ 5300 3200 l gs col4 s gr 
+% Polyline
+n 5900 2800 m
+ 5500 3200 l gs col4 s gr 
+% Polyline
+n 5500 2800 m
+ 5900 3200 l gs col4 s gr 
+% Polyline
+n 12000 3000 m
+ 7800 3000 l gs col0 s gr 
+% Polyline
+n 8900 2800 m
+ 8500 3200 l gs col4 s gr 
+% Polyline
+n 8500 2800 m
+ 8900 3200 l gs col4 s gr 
+% Polyline
+n 9500 2800 m
+ 9100 3200 l gs col4 s gr 
+% Polyline
+n 9100 2800 m
+ 9500 3200 l gs col4 s gr 
+% Polyline
+n 9700 2800 m
+ 10100 3200 l gs col4 s gr 
+% Polyline
+n 10100 2800 m
+ 9700 3200 l gs col4 s gr 
+% Polyline
+n 10700 2800 m
+ 10300 3200 l gs col4 s gr 
+% Polyline
+n 10300 2800 m
+ 10700 3200 l gs col4 s gr 
+% Polyline
+n 11300 2800 m
+ 10900 3200 l gs col4 s gr 
+% Polyline
+n 10900 2800 m
+ 11300 3200 l gs col4 s gr 
+% Polyline
+n 11900 2800 m
+ 11500 3200 l gs col4 s gr 
+% Polyline
+n 11500 2800 m
+ 11900 3200 l gs col4 s gr 
+% Polyline
+n 6100 2800 m
+ 6500 3200 l gs col4 s gr 
+% Polyline
+n 6500 2800 m
+ 6100 3200 l gs col4 s gr 
+% Polyline
+n 7900 2800 m
+ 8300 3200 l gs col4 s gr 
+% Polyline
+n 8300 2800 m
+ 7900 3200 l gs col4 s gr 
+% Polyline
+gs  clippath
+7399 3261 m 7323 3169 l 7050 3395 l 7319 3250 l 7126 3488 l cp
+eoclip
+n 6450 3975 m
+ 7350 3225 l gs col0 s gr gr
+
+% arrowhead
+n 7126 3488 m 7319 3250 l 7050 3395 l 7134 3403 l 7126 3488 l 
+ cp gs 0.00 setgray ef gr  col0 s
+% Polyline
+gs  clippath
+7079 3170 m 6998 3259 l 7260 3498 l 7079 3252 l 7341 3409 l cp
+eoclip
+n 7875 3975 m
+ 7050 3225 l gs col0 s gr gr
+
+% arrowhead
+n 7341 3409 m 7079 3252 l 7260 3498 l 7256 3413 l 7341 3409 l 
+ cp gs 0.00 setgray ef gr  col0 s
+/Times-Roman ff 300.00 scf sf
+3825 2100 m
+gs 1 -1 sc (processor 0) col0 sh gr
+/Times-Roman ff 270.00 scf sf
+4800 5550 m
+gs 1 -1 sc (boundary of physical domain) col0 sh gr
+/Times-Roman ff 240.00 scf sf
+1800 4050 m
+gs 1 -1 sc (time) col0 sh gr
+/Times-Roman ff 300.00 scf sf
+9300 2100 m
+gs 1 -1 sc (processor 1) col0 sh gr
+/Times-Roman ff 240.00 scf sf
+6750 4800 m
+gs 1 -1 sc (ghostzones) col0 sh gr
+/Times-Roman ff 210.00 scf sf
+7575 3675 m
+gs 1 -1 sc (copy) col0 sh gr
+/Times-Roman ff 210.00 scf sf
+6750 3825 m
+gs 1 -1 sc (copy) col0 sh gr
+$F2psEnd
+rs