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this is done now by either including a hidden toctree
or renaming *.rst files
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they indeed supress the annoying warnings during compilation but also
show up in the rendered documents
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this fixes uncritical warnings during the manual/api compilation:
* don't quote using backticks
* mark orphan docs as such
* don't refer to non-existant static files to be copied over
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.. from now on generates *only* the command-sections
in usage/modes/* not commands.rst.
also, this update brings sphinx labels cmd_MODE_CMDNAME
to use throughout the manual source
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