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* Correct typo in parameter descriptioneschnett2011-07-04
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@282 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Correct punctuationeschnett2010-06-02
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@276 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* IOUtil: Advertise that this is the new version of this APIschnetter2009-12-05
| | | | | | | | | | Advertise that this is the new version of this API, which has 'out_dt' arguments in certain IOUtil_* functions: #define IOUTIL_PARSER_HAS_OUT_DT 1 git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@275 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* IOUtil: Update parsing API to allow output by simulation timeschnetter2009-12-05
| | | | | | | | | Update the parsing API to allow output by simulation time (out_dt) in addition to output by iteration (out_every). This adds an additional parameter to IOUtil_ParseVarsForOutput. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@274 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Make error message clearer: mention that it does not try to read from the ↵knarf2009-08-12
| | | | | | given filename, but that what was given is only the basefilename git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@273 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Make error message clearer: mention that it does not try to read from the ↵knarf2009-08-12
| | | | | | given filename, but that what was given is only the basefilename git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@272 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Mention that you have to obmit file extensions in the filereader, because ↵knarf2009-08-12
| | | | | | they are added in the filereader itself. Otherwise the filereader looks for "filename.h5.h5" when you specify "filename.h5" as "filereader_ID_files" git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@271 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* bugfix: remove correct key from options list table in routine SetOutputVar()tradke2009-05-18
| | | | | | | | so that no false warning is issued anymore about an option with unrecognized key 'reductions' git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@270 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* extend IOUtil_ParseVarsForOutput() to parse an options string for a list oftradke2009-04-21
| | | | | | | | reductions (to be used in scalar output methods) This applies patch http://www.cactuscode.org/old/pipermail/patches/2009-April/000259.html. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@269 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* change eps to pdfknarf2009-02-02
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@265 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Include Licence in READMEknarf2009-01-27
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@264 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Unify README file formatknarf2009-01-26
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@263 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* use correct latex package, typoknarf2009-01-22
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@262 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* preallocate buffer in IOUtil_GetAllParameters(), to prevent too many subsequenttradke2008-10-17
| | | | | | | reallocs which may cause unnecessary memory fragmentation git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@261 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Remove .eps suffix from \includegraphics statements, so that pdflatexschnetter2008-08-28
| | | | | | | can process this file git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@260 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Add new parameter IO::checkpoint_every_walltime_hoursschnetter2008-05-12
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@259 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Change level 1 warning about non-existing directory to info messageschnetter2008-02-29
| | | | | | | when "autoprobe" is used git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@258 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Correct signatures of scheduled functionsschnetter2008-02-29
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@257 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Correct signatures of scheduled functionsschnetter2008-02-29
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@256 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Correct small (probably inconsequential) memory leak in recoveryschnetter2008-02-15
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@255 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Explicitly convert size_t to intschnetter2008-01-28
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@254 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* check for a valid cctkGH pointer passed into IOUtil_RecoverVarsFromDatafiles()tradke2007-06-01
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@253 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* added missing '#include <>' in filereader C API documentationtradke2007-05-18
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@252 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Added new steerable boolean parameter IO::abort_on_io_errors to be set to truetradke2007-04-18
| | | | | | | | if a run should be aborted after some I/O error has occured. The default is to only warn about I/O errors and continue the simulation. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@251 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Implement variable-specific output request option 'compression_level'tradke2006-11-17
| | | | | | | | | | | | | | | | so that users can specify eg. IOHDF5::compression_level = 1 IOHDF5::out_vars = "admbase::metric admconstraints::hamiltonian admbase::lapse{ compression_level = 0 }" to request HDF5 dataset compression for every output variable except for the lapse. This is currently supported only by PUGH's and Carpet's HDF5 I/O thorns. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@250 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Make only optional use of aliased function Coord_GetDefaultSystem().tradke2006-10-04
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@249 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Fixed a small memory leak in evaluation of option strings of I/O parameters.tradke2006-09-04
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@248 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Properly encode/decode non-printable characters as 3-digit octal numberstradke2006-08-30
| | | | | | | | in a parameter string to be checkpointed/recovered. Thanks to Erik Schnetter for this patch. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@247 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* In DecodeString, convert char to unsigned char before printing it asschnetter2006-08-25
| | | | | | | | | | integer. This ensures that there are no negative numbers. Check for errors, and clean up and emit a warning and return NULL in such a case. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@246 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* When encoding a non-printable character in a string, create aschnetter2006-08-25
| | | | | | | | zero-padded escape sequence ("\010") instead of a blank-padded one ("\ 10"). git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@245 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Have IOUtil_GetAllParameters() encode parameter values before concatenatingtradke2006-08-25
| | | | | | | | | | | "<parameter> = <value>" pairs by a newline delimiter, and its complement IOUtil_SetAllParameters() do the reverse. This fixes problems with checkpointing/recovery when parameter values themself contained newlines. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@244 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Create the default output directory on all processors if IO::out_mode isn't settradke2006-07-03
| | | | | | | to "onefile". git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@243 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Fix evaluation of IO::truncate_files_after_recovering and IO::truncate_filestradke2006-06-08
| | | | | | | paramters in IO_TruncateOutputFiles(). git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@242 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Document the IO::recover_and_remove parameter.tradke2006-06-06
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@241 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Introduce new boolean parameter IO::truncate_files.tradke2006-05-11
| | | | | | | | | | | | | | | | | Currently Cactus always truncates existing output files unless the simulation has been recovered from a checkpoint (in which case existing output files will get appended unless the parameter IO::truncate_files_after_recovering is set to true). Christian Ott requested that it should also be possible to always append new datasets to existing output files. The new boolean I/O parameter IO::truncate_files implements that. Its default value is true, preserving the existing Cactus behaviour. This applies patch http://www.cactuscode.org/old/pipermail/patches/2006-May/000169.html. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@240 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Introduce new boolean parameter IO::require_empty_output_directorytradke2006-05-11
| | | | | | | | | | | | | | | | which can be used to test if IO::out_dir points to either a non-existing or empty directory at simulation startup. If this parameter is set to "yes" and an already existing IO::out_dir is found to have any contents (eg. output files from a previous simulation which was using the same output directory) Cactus will print an appropriate error message and abort, as opposed to continuing and (potentially by accident) overwriting existing files. The default for IO::require_empty_output_directory is "no". This applies patch http://www.cactuscode.org/old/pipermail/patches/2006-May/000168.html. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@239 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Remove old unused test code.tradke2006-05-08
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@238 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Auto-recovery from an unchunked checkpoint file got broken in my last commit.tradke2006-02-13
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@237 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* When searching for a list of checkpoint files in recovery modetradke2006-02-13
| | | | | | | | | | | | IO::recover = "{auto|autoprobe}": check for a '.file_<processor>' suffix for chunked output files (and not only for '.file_0' as processor 0's output). This allows for recovery from a chunked checkpoint in auto mode even if not all the chunked checkpoint files are visible to all processors (eg. if the checkpoint directory is local on a compute node on a cluster). git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@236 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Clearly state that the 'IO::checkpoint_keep' parameter refers to the numbertradke2005-11-16
| | | | | | | of _evolution_ checkpoints to keep. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@235 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Correct email address in copyright statement.schnetter2005-10-22
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@234 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Correct email address in copyright statement.schnetter2005-10-22
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@233 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Correct email address of Cactus maintainers.schnetter2005-10-22
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@232 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* The general routine to parse the value of IO*::out_vars parameters now alsotradke2005-10-05
| | | | | | | | | checks for the option "out_unchunked = 'true|false|yes|no'" which can be used to overwrite the general output mode (as defined by IO::out_unchunked) on a per-variable basis. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@230 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Check for valid variable index in IOUtil_DefaultIORequest().tradke2005-07-25
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@228 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Add the rangetradke2005-06-20
| | | | | | | | | | | | "axis labels" :: "add axis labels information to output files" to IO::out_fileinfo in IOUtil instead of extending the parameter in (multiple) other thorns. This closes Cactus/1946: "Illegal keyword parameter values are accepted". git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@227 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Set the default slice centre for 1D/2D output to be the centre of the boxtradke2005-06-16
| | | | | | | if the user specified invalid values in the parfile. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@226 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Make IO::checkpoint_keep steerable all the time.tradke2005-06-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@225 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Slightly changed description for IO::recover = "manual" to make it more obvioustradke2005-02-07
| | | | | | | which other parameters need to be set for this case. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@224 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
* Parse option "refinement_levels" in an I/O parameter option string.tradke2005-02-04
| | | | | | | | If specified, it must be an array of positive integers selecting individual refinement levels to output. git-svn-id: http://svn.cactuscode.org/arrangements/CactusBase/IOUtil/trunk@223 b32723a9-ab3a-4a60-88e2-2e5d99d7c17a
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