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* Use the new routine IOUtil_AssembleFilename() to generate filenames fortradke2004-06-30
| | | | | | | | | checkpoint/filereader files. This closes PR CactusPUGHIO 1061: "IOHDF5/DumpGH.c/Checkpoint writes to strings without checking the string lengths". git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@199 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed typo in warning message.tradke2004-06-16
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@198 4825ed28-b72c-4eae-9704-e50c059e567d
* After setup, do an initial I/O parameter parsing and warn/stop on parsing errorstradke2004-06-09
| | | | | | | | (depending on IO::strict_io_parameter_check). You will also need to update CactusBase/IOUtil. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@197 4825ed28-b72c-4eae-9704-e50c059e567d
* Use IO::strict_io_parameter_check.tradke2004-06-09
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@196 4825ed28-b72c-4eae-9704-e50c059e567d
* Use default values for the "name", "iteration", and "timelevel"tradke2004-06-09
| | | | | | | attributes if a dataset doesn't have them attached. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@195 4825ed28-b72c-4eae-9704-e50c059e567d
* Use the "requires thorns" mechanism to ensure that all required thornsschnetter2004-06-08
| | | | | | | | are activated. A better solution is planned to be available in beta 16. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@194 4825ed28-b72c-4eae-9704-e50c059e567d
* Add a GLOBAL_ATTRIBUTES_GROUP to mark the output as a Cactus HDF5 file.tradke2004-06-08
| | | | | | | | | Give the HDF5 datasets proper names (following the IOHDF5 naming conventions). This closes PR CactusPUGHIO/1756: "ieee->hdf5 converter problem for 2D files". git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@193 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed filenames for chunked output files.tradke2004-05-06
| | | | | | | Don't output chunked files for grid scalars. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@191 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed usage stdout message.tradke2004-05-06
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@190 4825ed28-b72c-4eae-9704-e50c059e567d
* Bug fix from Yosef Zlochower: initialize "last_checkpoint_iteration" in the ↵tradke2004-04-30
| | | | | | GH structure. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@189 4825ed28-b72c-4eae-9704-e50c059e567d
* Temporarily commented out inheritance from IO.tradke2004-04-28
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@188 4825ed28-b72c-4eae-9704-e50c059e567d
* Inherit from IO.tradke2004-04-28
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@187 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed unused dataset from checkpoint file.tradke2004-03-29
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@185 4825ed28-b72c-4eae-9704-e50c059e567d
* Activate thorn SymBase.tradke2004-03-29
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@184 4825ed28-b72c-4eae-9704-e50c059e567d
* Updated configuration.ccl files. In Beta14 some of these willgoodale2004-03-27
| | | | | | | | | | | | | | disappear as function aliasing will be updated to have aliased functions either be optional or required, as opposed to optional as they are at the moment. This will thus remove the configuration.ccl files which are merely there to ensure that certain aliased functions are actually provided. Also far more stuff will be done via function aliasing which should remove some more of these dependencies. Tom git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@183 4825ed28-b72c-4eae-9704-e50c059e567d
* Option strings are enclosed in curly braces.tradke2004-03-13
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@182 4825ed28-b72c-4eae-9704-e50c059e567d
* Update parameter files to activate thorn SymBase.schnetter2004-03-09
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@181 4825ed28-b72c-4eae-9704-e50c059e567d
* Writing attributes was broken.tradke2004-02-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@180 4825ed28-b72c-4eae-9704-e50c059e567d
* Updated checkpoint file after changing the way Cactus parameters are stored.tradke2004-02-04
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@179 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed description of hyperslab selection parameters.tradke2004-01-30
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@178 4825ed28-b72c-4eae-9704-e50c059e567d
* Also print the outfile filename in progress report.tradke2004-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@177 4825ed28-b72c-4eae-9704-e50c059e567d
* Correct inter-thorn dependencies.schnetter2003-11-19
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@176 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed typo in warning message.tradke2003-09-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@175 4825ed28-b72c-4eae-9704-e50c059e567d
* PUGHIO* thorns now require the thorns they depend upon (PUGH, IOHDF5Util,tradke2003-09-04
| | | | | | | FlexIO) to be compiled in and activated. No need to inherit from them anymore. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@174 4825ed28-b72c-4eae-9704-e50c059e567d
* Include CoordBase in the ActiveThorns list.tradke2003-08-25
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@173 4825ed28-b72c-4eae-9704-e50c059e567d
* CardGrid3D now inherits from CoordBaserideout2003-08-22
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@172 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed typo in parameter name.tradke2003-08-14
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@171 4825ed28-b72c-4eae-9704-e50c059e567d
* Document the '-single_precision' command line option of the HDF5 recombiner.tradke2003-06-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@170 4825ed28-b72c-4eae-9704-e50c059e567d
* Added command line option '-single_precision'. If set, double-precisiontradke2003-06-10
| | | | | | | floating point datasets will be recombined and written in single precision. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@169 4825ed28-b72c-4eae-9704-e50c059e567d
* Some compilers (eg. SGI cc) only accept constant values as initializerstradke2003-06-10
| | | | | | | in a structure definition. The structure is now initialized explicitely. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@168 4825ed28-b72c-4eae-9704-e50c059e567d
* Changed IOHDF5's OutputVarAs() routine to also accept and evaluate an optiontradke2003-06-06
| | | | | | | string attached to the variable name. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@167 4825ed28-b72c-4eae-9704-e50c059e567d
* Fix for the recombination of chunks starting at the same origin (but havetradke2003-05-12
| | | | | | | | | different extents). Also open the input file(s) with a sieve buffer size of 32 MB in order to reduce the number of low-level reads when reading in a chunk. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@166 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed typo in parameter description of IOHDF5::out_dir.tradke2003-04-10
| | | | | | | This closes PR CactusPUGHIO/1470. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@165 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed testsuite output file due to small change in IOASCII gnuplot output styletradke2003-03-31
| | | | | | | (removed a blank line). git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@164 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed a typo in an output message.tradke2003-03-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@163 4825ed28-b72c-4eae-9704-e50c059e567d
* Recombination is done in z-slices now which greatly reduces the number oftradke2003-03-02
| | | | | | | | individual I/O writes. This shortens recombination time by a factor of proc_nx * proc_ny at best. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@162 4825ed28-b72c-4eae-9704-e50c059e567d
* There is doch a 'maximum number of open file descriptors' limitationtradke2003-02-27
| | | | | | | | so I had undo the corresponding changes from my last commit. Tested now with 1024 chunked files on a linux system. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@161 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed code which assumed that input files would need temporarily ↵tradke2003-02-27
| | | | | | closed/reopened. HDF5 doesn't seem to have a limitation in the number of open files. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@160 4825ed28-b72c-4eae-9704-e50c059e567d
* Mention IOHDF5's restriction of not being able to output the same variabletradke2003-02-18
| | | | | | | more than once per timestep. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@159 4825ed28-b72c-4eae-9704-e50c059e567d
* Added SYS_INC_DIRS to the compile command line for utility programs.tradke2003-02-10
| | | | | | | This closes PR CactusPUGHIO/1391. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@158 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed some 'line too long' problems. This closes PR CactusPUGHIO/1362.tradke2003-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@157 4825ed28-b72c-4eae-9704-e50c059e567d
* New checkpoint file without the old deprecated I/O parameters.tradke2003-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@156 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed testsuite parameters according to CactusWave/WaveToyC/test/test_rad.par.tradke2003-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@155 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed old deprecated I/O parameters.tradke2003-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@154 4825ed28-b72c-4eae-9704-e50c059e567d
* Copy pointer to string parameter into local variable before modifying it.tradke2003-01-07
| | | | | | | | This prevents future problems when string parameter pointer will be made read-only. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@153 4825ed28-b72c-4eae-9704-e50c059e567d
* Moved '#include "ioHDF5GH.h"' up so that the config #defines from hdf5.h cantradke2003-01-06
| | | | | | | | be used later on eg. for conditional #includes. This closes PR CactusPUGHIO/1355. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@152 4825ed28-b72c-4eae-9704-e50c059e567d
* Added missing includes and fixed structure name when compiling with parallel ↵tradke2002-12-05
| | | | | | | | | HDF5. This fixes PR CactusPUGHIO/1329. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@151 4825ed28-b72c-4eae-9704-e50c059e567d
* No need for "USES INCLUDE HEADER: Hyperslab.h" anymore.tradke2002-11-06
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@150 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed initial pathname of object to be extracted.tradke2002-10-29
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@149 4825ed28-b72c-4eae-9704-e50c059e567d
* Check for memory allocation errors.tradke2002-08-21
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@148 4825ed28-b72c-4eae-9704-e50c059e567d
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