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* Fixed a typo in an output message.tradke2003-03-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@163 4825ed28-b72c-4eae-9704-e50c059e567d
* Recombination is done in z-slices now which greatly reduces the number oftradke2003-03-02
| | | | | | | | individual I/O writes. This shortens recombination time by a factor of proc_nx * proc_ny at best. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@162 4825ed28-b72c-4eae-9704-e50c059e567d
* There is doch a 'maximum number of open file descriptors' limitationtradke2003-02-27
| | | | | | | | so I had undo the corresponding changes from my last commit. Tested now with 1024 chunked files on a linux system. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@161 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed code which assumed that input files would need temporarily ↵tradke2003-02-27
| | | | | | closed/reopened. HDF5 doesn't seem to have a limitation in the number of open files. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@160 4825ed28-b72c-4eae-9704-e50c059e567d
* Mention IOHDF5's restriction of not being able to output the same variabletradke2003-02-18
| | | | | | | more than once per timestep. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@159 4825ed28-b72c-4eae-9704-e50c059e567d
* Added SYS_INC_DIRS to the compile command line for utility programs.tradke2003-02-10
| | | | | | | This closes PR CactusPUGHIO/1391. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@158 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed some 'line too long' problems. This closes PR CactusPUGHIO/1362.tradke2003-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@157 4825ed28-b72c-4eae-9704-e50c059e567d
* New checkpoint file without the old deprecated I/O parameters.tradke2003-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@156 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed testsuite parameters according to CactusWave/WaveToyC/test/test_rad.par.tradke2003-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@155 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed old deprecated I/O parameters.tradke2003-01-20
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@154 4825ed28-b72c-4eae-9704-e50c059e567d
* Copy pointer to string parameter into local variable before modifying it.tradke2003-01-07
| | | | | | | | This prevents future problems when string parameter pointer will be made read-only. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@153 4825ed28-b72c-4eae-9704-e50c059e567d
* Moved '#include "ioHDF5GH.h"' up so that the config #defines from hdf5.h cantradke2003-01-06
| | | | | | | | be used later on eg. for conditional #includes. This closes PR CactusPUGHIO/1355. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@152 4825ed28-b72c-4eae-9704-e50c059e567d
* Added missing includes and fixed structure name when compiling with parallel ↵tradke2002-12-05
| | | | | | | | | HDF5. This fixes PR CactusPUGHIO/1329. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@151 4825ed28-b72c-4eae-9704-e50c059e567d
* No need for "USES INCLUDE HEADER: Hyperslab.h" anymore.tradke2002-11-06
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@150 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed initial pathname of object to be extracted.tradke2002-10-29
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@149 4825ed28-b72c-4eae-9704-e50c059e567d
* Check for memory allocation errors.tradke2002-08-21
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@148 4825ed28-b72c-4eae-9704-e50c059e567d
* Added missing thorns and changed to new I/O parameter names.tradke2002-08-21
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@147 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed quotes from Hyperslab.h to fix Cactus/1178allen2002-08-11
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@146 4825ed28-b72c-4eae-9704-e50c059e567d
* Add the "Cactus version" attribute to a datafile indicating that variablestradke2002-06-27
| | | | | | | | | | with multiple timelevels should be read in following the new timelevel scheme. Thanks to Ken Smith for pointing this out. This closes PR Documentation/1107. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@145 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed wrong CCTK_FILEVERSION string.tradke2002-06-10
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@144 4825ed28-b72c-4eae-9704-e50c059e567d
* Changed the warnings about deprecated I/O parameters.tradke2002-06-07
| | | | | | | They are depreciated in BETA12 (not BETA13). git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@142 4825ed28-b72c-4eae-9704-e50c059e567d
* Added email addresses of author(s)/maintainer(s) of this thorn.tradke2002-06-07
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@141 4825ed28-b72c-4eae-9704-e50c059e567d
* changing the documentation.tex files to use our cactus style fileikelley2002-06-04
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@140 4825ed28-b72c-4eae-9704-e50c059e567d
* Give a description and an example on how to use option strings to specifytradke2002-05-28
| | | | | | | | a hyperslab selection and the output frequency for individual variables. Also added some smaller fixes in the thorn documentation. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@139 4825ed28-b72c-4eae-9704-e50c059e567d
* Allow the 'out_every' option in option strings to set the output frequencytradke2002-05-28
| | | | | | | | | | | | for individual variables. Allow hyperslab options 'origin', 'direction', 'extent', and 'downsample' in option strings to specify hyperslab selections for individual variables. You also need to update CactusBase/IOUtil now. See the thornguide for a description and an example. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@138 4825ed28-b72c-4eae-9704-e50c059e567d
* Make use of Tom's extensions to parameter declarations:tradke2002-05-27
| | | | | | | USE some_parameter AS alias. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@137 4825ed28-b72c-4eae-9704-e50c059e567d
* Added missing include file "cctk.h" which define CCTK_FILEVERSION.tradke2002-05-23
| | | | | | | This closes PR CactusPUGHIO/1064. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@136 4825ed28-b72c-4eae-9704-e50c059e567d
* Save the iteration number of the last checkpoint and don't dump a terminationtradke2002-05-21
| | | | | | | | checkpoint if it was already written as an evolution checkpoint before. This closes PR IO/1058. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@135 4825ed28-b72c-4eae-9704-e50c059e567d
* Changed the arrangement name in the CCTK_FILEVERSION strings from AlphaThornstradke2002-05-14
| | | | | | | into CactusPUGHIO. This closes PR CactusPUGHIO/1045. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@134 4825ed28-b72c-4eae-9704-e50c059e567d
* Added '-s' as an option to grep when checking for LFS in the HDF5 installation.tradke2002-05-13
| | | | | | | This prevents a warning from grep if the HDF5 configuration file doesn't exist. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@133 4825ed28-b72c-4eae-9704-e50c059e567d
* Moved the check for LFS from make.configuration.defn to make.configuration.depstradke2002-05-13
| | | | | | | to prevent setting the CFLAGS globally. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@132 4825ed28-b72c-4eae-9704-e50c059e567d
* Added '-s' as an option to grep when checking for LFS in the HDF5 installation.tradke2002-05-13
| | | | | | | This prevents a warning from grep if the HDF5 configuration file doesn't exist. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@131 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed include paths.tradke2002-05-06
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@130 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed path to utility sources in build rules.tradke2002-05-06
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@129 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed path to checkpoint file to recover from.tradke2002-05-06
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@128 4825ed28-b72c-4eae-9704-e50c059e567d
* Parameter names changes as announced in today's mail to users@cactuscode.org.tradke2002-05-06
| | | | | | | | | You must also update thorns IOHDF5Util and IOUtil now. This thorn will be moved from AlphaThorns to CactusPUGHIO now. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@127 4825ed28-b72c-4eae-9704-e50c059e567d
* Changes to use the I/O request description and parsing routines which movedtradke2002-04-26
| | | | | | | | from IOHDF5Util to IOUtil. You must update both BetaThorns/IOHDF5Util and CactusBase/IOUtil now. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@126 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed unused parameters inherited from IO.tradke2002-04-26
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@125 4825ed28-b72c-4eae-9704-e50c059e567d
* Code cleanup before moving into producion mode.tradke2002-04-23
| | | | | | | You must also update BetaThorns/IOHDF5Util now. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@124 4825ed28-b72c-4eae-9704-e50c059e567d
* Bugfix in parameter evaluation: if IOHDF5::out*_every was set to 0 it wouldtradke2002-04-19
| | | | | | | default to IO::out_every (instead of disabling IOHDF5 output). git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@123 4825ed28-b72c-4eae-9704-e50c059e567d
* Take the identity string from the cGH structure.tradke2002-04-18
| | | | | | | At least this file doesn't depend on PUGH anymore. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@122 4825ed28-b72c-4eae-9704-e50c059e567d
* Undo my last commit which changed the recovery dir.tradke2002-04-18
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@121 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed the recovery dir setting. The new testsuite stuff now expects it onetradke2002-04-17
| | | | | | | subdir up. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@120 4825ed28-b72c-4eae-9704-e50c059e567d
* Some more tidying up.tradke2002-04-17
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@119 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed a scheduled routine which was commented out anyway.tradke2002-04-17
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@118 4825ed28-b72c-4eae-9704-e50c059e567d
* Just some minor changes before doing the transition to use the new hyperslabbingtradke2002-04-17
| | | | | | | API: completed grdoc, put in some more comments, removed dead code. git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@117 4825ed28-b72c-4eae-9704-e50c059e567d
* Get rid of old code which isn't used anymore. Most of it went to IOHDF5Util.tradke2002-04-16
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@116 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed bitant_to_fullmode utility from the makefile targets.tradke2002-04-12
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@115 4825ed28-b72c-4eae-9704-e50c059e567d
* Removed a utility which was there only for the platinum runs.tradke2002-04-08
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@114 4825ed28-b72c-4eae-9704-e50c059e567d
* Fixed some typos and formatting things David found out.tradke2002-04-08
| | | | git-svn-id: http://svn.cactuscode.org/arrangements/CactusPUGHIO/IOHDF5/trunk@113 4825ed28-b72c-4eae-9704-e50c059e567d
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