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* Correct typoeschnett2012-10-18
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4877 17b73243-c579-4c4c-a9d2-2d5706c11dac
* make 'make tags' properly handle symlinksrhaas2012-10-17
| | | | | | | | patch by Matt Kinsey git-svn-id: http://svn.cactuscode.org/flesh/trunk@4876 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Support Darwin 12.2.0eschnett2012-09-20
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4875 17b73243-c579-4c4c-a9d2-2d5706c11dac
* make sure testsuite can find MPI when CACTUS_CONFIGS_DIR is setrhaas2012-09-19
| | | | | | | patch by Steve Brandt git-svn-id: http://svn.cactuscode.org/flesh/trunk@4874 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Update Fortran API for CCTK_LOOP macroseschnett2012-09-19
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4873 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Enforce that arrangement names are legal C identifierseschnett2012-09-16
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4872 17b73243-c579-4c4c-a9d2-2d5706c11dac
* increase default value of RELTOL to 1e-12rhaas2012-09-14
| | | | | | | | this makes the test system less prone to false alarms when quantities larger than of order unity are involved git-svn-id: http://svn.cactuscode.org/flesh/trunk@4871 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Correct autogenerating cctk_Capabilities.heschnett2012-09-13
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4870 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Replace CCTK_RESTRICT by restricteschnett2012-09-13
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4869 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Disable K&R prototype for getopt()eschnett2012-09-13
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4868 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Use more readable variable names in CreateThornsHeaderseschnett2012-09-11
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4867 17b73243-c579-4c4c-a9d2-2d5706c11dac
* correct and expand documentation of CCTK_TraverseStringrhaas2012-09-06
| | | | | | | | by listing the possible values for selection and correcting the return type of the callback function to void rather than int. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4866 17b73243-c579-4c4c-a9d2-2d5706c11dac
* check that default values of restricted parameters are consistent betweenrhaas2012-09-05
| | | | | | | thorns git-svn-id: http://svn.cactuscode.org/flesh/trunk@4865 17b73243-c579-4c4c-a9d2-2d5706c11dac
* whitespace change in "grid" file to reflect change in Carpetrhaas2012-08-28
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4864 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Add support for Darwin 12.1.0eschnett2012-08-23
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4863 17b73243-c579-4c4c-a9d2-2d5706c11dac
* reintroduce dependency fixup to avoid full compile when thornlist changesrhaas2012-08-11
| | | | | | | | | | this fixes an issue introduced in r4839 where the original patch removed special treatment for three (or so) files, assuming that these files are not generated any more. This was wrong, and this patch reverts special treatment for one of these files. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4862 17b73243-c579-4c4c-a9d2-2d5706c11dac
* include documentation on Fortran interface of CCTK_VarDataPtrrhaas2012-08-11
| | | | | | | as well as a typo in the ScheduleQueryCurrentFunction example git-svn-id: http://svn.cactuscode.org/flesh/trunk@4861 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Take REQUIRES and OPTIONAL into account when determining library link ordereschnett2012-08-10
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4860 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Force reconfiguringeschnett2012-08-10
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4859 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Take $(CFLAGS) or $(CXXFLAGS) into account when determining dependencieseschnett2012-08-10
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4858 17b73243-c579-4c4c-a9d2-2d5706c11dac
* dummy commit to test commits after change to apache configknarf2012-08-08
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4857 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Improve flesh MPI configuration messageshinder2012-08-03
| | | | | | Avoid confusion now that the flesh MPI support is deprecated. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4856 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Correct description of CCTK_LocalArrayReductionHandleeschnett2012-08-02
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4855 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Support Darwin 12.0.0 (OS X 10.8.0)eschnett2012-07-29
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4854 17b73243-c579-4c4c-a9d2-2d5706c11dac
* make cleandeps a no-op if build directory does not existrhaas2012-07-25
| | | | | | | eg. because of a previous realclean git-svn-id: http://svn.cactuscode.org/flesh/trunk@4853 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Support Darwin 11.4.2eschnett2012-07-25
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4852 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Committing change for ticket #176sbrandt2012-07-24
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4851 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Correct dependency calculation for CUDAeschnett2012-07-24
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4850 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Generate a fatal error if trying to run tests on more than one process ↵hinder2012-07-24
| | | | | | without having MPI git-svn-id: http://svn.cactuscode.org/flesh/trunk@4849 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Declare argument const to prevent compiler warningeschnett2012-07-22
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4848 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Move MPI support from flesh to a thorneschnett2012-07-21
| | | | | | | | | | | | | | | | Move MPI support from flesh to thorn ExternalLibraries/MPI. This also requires thorns that call MPI directly to declare this in their configuration.ccl. Existing configurations using MPI need to include ExternalLibraries/MPI into their thorn list. * Declare that the flesh optionally uses MPI (because it needs to call MPI_Init) * Update test case mechanism to find out whether MPI is used * Handle configuration bindings for flesh * Don't special-case Crays any more when configuring Linux git-svn-id: http://svn.cactuscode.org/flesh/trunk@4847 17b73243-c579-4c4c-a9d2-2d5706c11dac
* add documentation for CCTK_TraverseStringrhaas2012-07-17
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4846 17b73243-c579-4c4c-a9d2-2d5706c11dac
* add parameters to reverse un-enforced Cactus schedule orderingrhaas2012-07-16
| | | | | | | | | | | | | | | | | | | | | | This patch adds two new parameters to the flesh: * schedule_sort_mode - which affects the order of schedule items before enforcing BEFORE/AFTER * schedule_sort_warnings - which outputs warnings if a schedule item refers to a non-existing item in its BEFORE/AFTER modifiers Neither one is intended to be used in production runs but they are useful for debugging a schedule. schedule_sort_warnings is intended to catch typos in dependency names and when one tries to order with respect to items hidden within a group. It will find a number of false positives for items that are only scheduled based on parameter settings. Eg. MoL's RHS NaN checker. schedule_sort_mode can be used to ensure that the schedule order does not depend on the (semi-random) order that Cactus generates for non-enforced ordering. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4845 17b73243-c579-4c4c-a9d2-2d5706c11dac
* have -reconfig target execute -cleandeps after reconfigurationrhaas2012-07-15
| | | | | | | this can be required if the reconfiguration changes dependency relationships git-svn-id: http://svn.cactuscode.org/flesh/trunk@4844 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Correct error in determining dependencieseschnett2012-07-15
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4843 17b73243-c579-4c4c-a9d2-2d5706c11dac
* CCTKReference.tex: Add information on vector variables to CCTK_VarIndexhinder2012-07-06
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4842 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Introduce cctk_ash, retire cctk_lssheschnett2012-07-04
| | | | | | | | | | | | Introduce cctk_ash, describing the process-local array shape that has been allocated. This may be larger than cctk_lsh, the process-local shape that should be used. Retire cctk_lssh and related infrastructure to handle staggered grid functions. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4841 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Remove redundant includessbrandt2012-07-03
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4840 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Changes for ticket #768sbrandt2012-06-18
| | | | | | | | Change per thorn -DTHORN_IS_xxx to a per thorn -I bindings/include/xxx git-svn-id: http://svn.cactuscode.org/flesh/trunk@4839 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Add script to auto-generate cctk_Loop.heschnett2012-06-18
| | | | | | | | Also update API. Add documentation. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4838 17b73243-c579-4c4c-a9d2-2d5706c11dac
* remove accidentally commited duplicate capabilites handling coderhaas2012-06-17
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4837 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Replace CCTK_RESTRICT by restrict, which is now defined by the flesheschnett2012-06-17
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4836 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Correct errors in handling optional capabilitieseschnett2012-06-17
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4835 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Remove unused and broken BinaryTree implementationeschnett2012-06-15
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4834 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Add missing lssh field to struct cGroupDynamicDataeschnett2012-06-11
| | | | | | | | | The size and memory layout of grid functions is described by two variables, cctk_lsh and cctk_lssh. The structure cGroupDynamicData is missing the lssh field. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4833 17b73243-c579-4c4c-a9d2-2d5706c11dac
* correctly detect circular schedule itemsrhaas2012-06-11
| | | | | | | | | before this Cactus would not detect certain cyclic dependencies eg. ones where two scheduled functions are each scheduled after the other or where a function wants to be scheduled after itself. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4832 17b73243-c579-4c4c-a9d2-2d5706c11dac
* have CCTK_RegexMatch return a distinct error code if patterns is invalidrhaas2012-06-05
| | | | | | | | | | | | | | This patch changes the return value in the "does not compile" case to -1 and updates all source files that I could find that use it. Note that this patch changes behaviour of a routine. It used to return 0 for non-compiling patterns so thorns that test for C-like true would interpret invalid patterns as does-not-match, but will interpret the -1 return value as does-match. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4831 17b73243-c579-4c4c-a9d2-2d5706c11dac
* don't reference something outside the appendix because the appendices are ↵knarf2012-05-21
| | | | | | used in more than one document git-svn-id: http://svn.cactuscode.org/flesh/trunk@4826 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Describe OPTIONS and TAGS in schedule.ccleschnett2012-05-17
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4825 17b73243-c579-4c4c-a9d2-2d5706c11dac
* remove bashisms, resolves ticket #901knarf2012-05-16
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4824 17b73243-c579-4c4c-a9d2-2d5706c11dac
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