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* Add CCTK_ATTRIBUTE_ALIGNED, which is auto-configured and expands toeschnett2011-01-04
| | | | | | | | gcc' __attribute__(__aligned__(...)) if present. This is necessary for vectorisation. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4662 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Delete large "lib" directories without exceeding command line length limitationseschnett2011-01-04
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4661 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Force a rebuild of all Cactus configurations sinceeschnett2010-12-23
| | | | | | | cctki_Capabilities.h was renamed to cctk_Capabilities.h. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4660 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Improve optional requirement of capabilitieseschnett2010-12-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Thorns can specify that they can make use of a particular capability (for example HDF5), but that it is not absolutely required. It is currently not possible to detect a capability in the source code or make system of a thorn because there is no preprocessor macro and no make variable defined to indicate that the capability is available. Additionally, the preprocessor definitions which are explicitly provided by a capability are written to an include file which is malformed and hence these definitions cannot be read. This commit: * Introduces makefile and preprocessor variables HAVE_CAPABILITY_<cap> for each provided capability * Removes the incorrect definition line causing the include file to be malformed * Renames cctki_Capabilities.h to cctk_Capabilities.h and causes cctk_Capabilities.h to be included from cctk.h by all thorns * Excludes cctk_Capabilities.h from dependency checking (dependencies of the files included from this one will be sufficient) [Patch from Ian Hinder] git-svn-id: http://svn.cactuscode.org/flesh/trunk@4659 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Autoconf CCTK_ATTRIBUTE_NOINLINE, which expands toeschnett2010-12-23
| | | | | | | __attribute__((noinline)) if that is supported by the compiler. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4658 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Add example for CCTK_VECTGFINDEX3Deschnett2010-12-23
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4657 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Add new configuration flags CPP_DEBUG_FLAGS etc., which allow passingeschnett2010-12-22
| | | | | | | | | | | | | | | | | | | | | | | special CPP flags for debugging. These complement the existing C_DEBUG_FLAGS and CPPFLAGS. In particular, the following flags are added: CPP_DEBUG_FLAGS FPP_DEBUG_FLAGS CPP_OPTIMISE_FLAGS FPP_OPTIMISE_FLAGS CPP_PROFILE_FLAGS FPP_PROFILE_FLAGS CPP_OPENMP_FLAGS FPP_OPENMP_FLAGS CPP_WARN_FLAGS FPP_WARN_FLAGS Applications are e.g. adding -Wall to CPP_WARN_FLAGS, or -fopenmp to CPP_OPENMP_FLAGS. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4656 17b73243-c579-4c4c-a9d2-2d5706c11dac
* use define OPENMPI_BIN_LIB_DIR to specify library directories which have to ↵knarf2010-12-01
| | | | | | be searched when the openmpi binaries are executed. This can happen e.g. when using openmpi which was compiled with the intel compiler, but the corresponding intel module wasn't loaded git-svn-id: http://svn.cactuscode.org/flesh/trunk@4655 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Add CCTK_VECTGFINDEX3D and friendseschnett2010-11-24
| | | | | | | | | | Add functions CCTK_VectGF1D, CCTK_VectGF2D etc. and the corresponding macros CCTK_VECTGFINDEX1D etc. that allow indexing into vector grid variables. Vector grid variables require an additional index, namely the vector index; these functions simplify using them. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4654 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Force people to reconfigure their buildseschnett2010-11-24
| | | | | | | | Modify force-reconfigure to force people to reconfigure their builds because the way unsued variables are handles changed. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4653 17b73243-c579-4c4c-a9d2-2d5706c11dac
* make Cactus add include paths to the compiler options such that fortran ↵knarf2010-11-23
| | | | | | module files outside of scratch can be found, closes ET ticket #99 git-svn-id: http://svn.cactuscode.org/flesh/trunk@4652 17b73243-c579-4c4c-a9d2-2d5706c11dac
* support __unused__ where known. This let's e.g. gcc know that especially the ↵knarf2010-11-23
| | | | | | Cactus variables might be unused and should not be reported as such. This closes ET ticket #1 git-svn-id: http://svn.cactuscode.org/flesh/trunk@4651 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Add support for Darwin 10.5.0eschnett2010-11-23
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4650 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Apply patch by Barry Wardell to fix the hyperlinks in the Reference Manualknarf2010-11-04
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4647 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Provide Fortran wrapper for CCTK_SyncGroupsI().rideout2010-11-03
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4646 17b73243-c579-4c4c-a9d2-2d5706c11dac
* use getpwuid($<) instead of getlogin() which returns an empty string on occationknarf2010-10-28
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4645 17b73243-c579-4c4c-a9d2-2d5706c11dac
* detect error in dimension size settings of grid arrays, and produce a ↵knarf2010-10-27
| | | | | | meaningful error message git-svn-id: http://svn.cactuscode.org/flesh/trunk@4644 17b73243-c579-4c4c-a9d2-2d5706c11dac
* output (a bit) more information in the testsuite summary: current time, user ↵knarf2010-10-26
| | | | | | name and host name git-svn-id: http://svn.cactuscode.org/flesh/trunk@4643 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Enforce reconfiguring Cactus configurations sinceeschnett2010-10-13
| | | | | | | | ExternalLibraries/HDF5 has changed. This may otherwise lead to build failures in thorns that use HDF5. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4642 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Update documentation of CCTK_ParameterSeteschnett2010-10-04
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4641 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Remove default option -std=gnu++0x for the Darwin gcc C++ compiler,eschnett2010-10-01
| | | | | | | | since the default compiler on some Darwin systems doesn't understand it git-svn-id: http://svn.cactuscode.org/flesh/trunk@4640 17b73243-c579-4c4c-a9d2-2d5706c11dac
* fix last commit (ooops). ValidateModifiers() is apparently called for all ↵knarf2010-09-29
| | | | | | modifiers, and some of them apparently allow non-full variable names. My mistake, not corrected. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4639 17b73243-c579-4c4c-a9d2-2d5706c11dac
* add documentation as pdf for easy access through repository linkknarf2010-09-28
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4638 17b73243-c579-4c4c-a9d2-2d5706c11dac
* check return value of CCTK_VarIndex for check of if/while variable in ↵knarf2010-09-28
| | | | | | schedule tree, and give corresponding warning message git-svn-id: http://svn.cactuscode.org/flesh/trunk@4637 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Correct routine nameeschnett2010-09-17
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4636 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Jian Tao: typo of exporting the wrong variableknarf2010-09-16
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4635 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Ian Hinder:knarf2010-09-10
| | | | | | | | | | | I was confused about the meaning of CCTK_LSSH and discussed it with Erik, leading to the attached patch to the documentation. UsersGuide: Clarify meaning of "lssh" grid size git-svn-id: http://svn.cactuscode.org/flesh/trunk@4634 17b73243-c579-4c4c-a9d2-2d5706c11dac
* only use $intel_dir/lib/icrt.link when it exists, which it does not for ↵knarf2010-09-08
| | | | | | newer versions of the intel compiler - only applies when the intel compiler is not used for linking git-svn-id: http://svn.cactuscode.org/flesh/trunk@4633 17b73243-c579-4c4c-a9d2-2d5706c11dac
* use --version instead of --dumpversion for gfortran because of changes in ↵knarf2010-09-08
| | | | | | the output of the --version option, and to easily support old and new versions of gfortran git-svn-id: http://svn.cactuscode.org/flesh/trunk@4632 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Give more information about the location of the user defaults fileknarf2010-09-08
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4631 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Don't overwrite PTHREAD_LIBS if set in option listknarf2010-09-08
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4630 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Correct handling multi-line BEGIN DEFINE blocks in configurations scriptseschnett2010-09-02
| | | | | | | | | | | | | | | I have discovered a bug in the CreateConfigurationBindings.pl script that prevents one from declaring more than one definition via the "BEGIN DEFINE" block in a configuration script. This is because the perl script receives the entire block as a single string, prefixes it with "#define" and then writes to the cctki_THORN.h file. I have modified the script to split the string on newlines and then prefix each line with "#define", which then provides the expected behavior. [Patch from Eric L. Seidel] git-svn-id: http://svn.cactuscode.org/flesh/trunk@4629 17b73243-c579-4c4c-a9d2-2d5706c11dac
* oops, wrong directoryknarf2010-08-17
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4628 17b73243-c579-4c4c-a9d2-2d5706c11dac
* add example parameter fileknarf2010-08-17
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4627 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Add support for Darwin 10.4.0eschnett2010-07-09
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4624 17b73243-c579-4c4c-a9d2-2d5706c11dac
* move debug declarations to the top of the file, no actual change in the codeknarf2010-06-11
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4622 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Patch from Barry Wardell, thanks:knarf2010-06-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Enables support for compiling HTML versions of the Cactus documentation. It adds new build targets: ReferenceManualHTML MaintainersGuideHTML UsersGuideHTML *-ThornDocHTML *-ArrangementDocHTML ThornDocHTML ArrangementDocHTML ThornGuideHTML Which are HTML equivalents of the existing doc targets. This makes use of the small new scripts lib/sbin/ArrangementDocHTML and lib/sbin/ThornDocHTML. This patch also introduces a small new script, lib/sbin/ConvertFigures, which automates the process of converting figures to the correct format for htlatex. Finally, it makes some changes to doc/latex/cactus.sty to improve the rendering of the HTML. It also modifies the Reference Guide to produce a more consistent result (any cases of the CCTKFunc macro were updated to use the newer FunctionDescriptionEntry). git-svn-id: http://svn.cactuscode.org/flesh/trunk@4621 17b73243-c579-4c4c-a9d2-2d5706c11dac
* reorganizes the printout of the scheduling treeknarf2010-06-03
| | | | | | Cactus does at startup a bit, fixing also some indentation problems. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4620 17b73243-c579-4c4c-a9d2-2d5706c11dac
* test commitknarf2010-06-02
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4619 17b73243-c579-4c4c-a9d2-2d5706c11dac
* remove CVS headerknarf2010-06-02
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4618 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Tell Cactus to call the configuration scripts of Cactus thorns as 'make' ↵knarf2010-06-02
| | | | | | scripts, which especially enables those to use parallel make-builds themselfes. git-svn-id: http://svn.cactuscode.org/flesh/trunk@4617 17b73243-c579-4c4c-a9d2-2d5706c11dac
* This patch corrects a typo in the CST output.eschnett2010-05-27
| | | | | | | [Patch from Ian Hinder] git-svn-id: http://svn.cactuscode.org/flesh/trunk@4616 17b73243-c579-4c4c-a9d2-2d5706c11dac
* Add support for Darwin 10.3.1eschnett2010-05-24
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4615 17b73243-c579-4c4c-a9d2-2d5706c11dac
* remove outdated file - doesn't work anymore anywayknarf2010-04-29
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4614 17b73243-c579-4c4c-a9d2-2d5706c11dac
* fix cvs/svn information retrievalknarf2010-04-29
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4613 17b73243-c579-4c4c-a9d2-2d5706c11dac
* sort output alphabetically (was unsorted)knarf2010-04-23
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4612 17b73243-c579-4c4c-a9d2-2d5706c11dac
* include more information in summary.log fileknarf2010-04-23
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4611 17b73243-c579-4c4c-a9d2-2d5706c11dac
* sort output of testsuite results. This makes it much easier to compare the ↵knarf2010-04-22
| | | | | | results of two similar configurations git-svn-id: http://svn.cactuscode.org/flesh/trunk@4610 17b73243-c579-4c4c-a9d2-2d5706c11dac
* test flesh commit messageknarf2010-04-20
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4609 17b73243-c579-4c4c-a9d2-2d5706c11dac
* test flesh commit messageknarf2010-04-20
| | | | git-svn-id: http://svn.cactuscode.org/flesh/trunk@4608 17b73243-c579-4c4c-a9d2-2d5706c11dac
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